miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1510 3' -50.6 NC_001335.1 + 21955 0.66 0.917212
Target:  5'- gCCGAUGGcCUCUAGuGGGuuGGUGggGUa -3'
miRNA:   3'- -GGCUGCUuGAGGUU-CCU--UCGCuuCAg -5'
1510 3' -50.6 NC_001335.1 + 22234 0.73 0.605859
Target:  5'- cUCGGCGAACUUC-AGGAacAGCGGGccGUCu -3'
miRNA:   3'- -GGCUGCUUGAGGuUCCU--UCGCUU--CAG- -5'
1510 3' -50.6 NC_001335.1 + 23696 0.67 0.881908
Target:  5'- aUCGACGucaucCUCCucgGAGGAGGCGGcgggGGUa -3'
miRNA:   3'- -GGCUGCuu---GAGG---UUCCUUCGCU----UCAg -5'
1510 3' -50.6 NC_001335.1 + 23779 0.68 0.865855
Target:  5'- cCCGcCGccucCUCCGAGGAGGaUGAcGUCg -3'
miRNA:   3'- -GGCuGCuu--GAGGUUCCUUC-GCUuCAG- -5'
1510 3' -50.6 NC_001335.1 + 24372 0.67 0.906689
Target:  5'- gCGGCGAACguagcgCCGAcagcgcggaggucguGGAuGCGGAGUUc -3'
miRNA:   3'- gGCUGCUUGa-----GGUU---------------CCUuCGCUUCAG- -5'
1510 3' -50.6 NC_001335.1 + 26242 0.66 0.910722
Target:  5'- gCGgcaGCGGGCUCCAGGccccGAGGCGcGGGUUc -3'
miRNA:   3'- gGC---UGCUUGAGGUUC----CUUCGC-UUCAG- -5'
1510 3' -50.6 NC_001335.1 + 27885 0.66 0.929317
Target:  5'- aCGGCGAAUgggCguGGuuGAAGCGAacGGUCg -3'
miRNA:   3'- gGCUGCUUGa--GguUC--CUUCGCU--UCAG- -5'
1510 3' -50.6 NC_001335.1 + 31861 0.77 0.368022
Target:  5'- gCUGACGGACUCCAugauguGGA--CGAGGUCg -3'
miRNA:   3'- -GGCUGCUUGAGGUu-----CCUucGCUUCAG- -5'
1510 3' -50.6 NC_001335.1 + 32238 0.67 0.892504
Target:  5'- gCCGACGAGCUggCCGAGuucGCGGgccggaacugcuaccGGUCg -3'
miRNA:   3'- -GGCUGCUUGA--GGUUCcuuCGCU---------------UCAG- -5'
1510 3' -50.6 NC_001335.1 + 32324 0.67 0.874014
Target:  5'- -gGugGAACgaggucagCCAGGGGgcAGCGAAGcCc -3'
miRNA:   3'- ggCugCUUGa-------GGUUCCU--UCGCUUCaG- -5'
1510 3' -50.6 NC_001335.1 + 35197 0.67 0.903943
Target:  5'- gCCGAUG--UUCCGGGGAAG-GAAGg- -3'
miRNA:   3'- -GGCUGCuuGAGGUUCCUUCgCUUCag -5'
1510 3' -50.6 NC_001335.1 + 35478 0.67 0.874014
Target:  5'- gCCGcCGAuCUCCGAguucuuGGGAGgGAGGUg -3'
miRNA:   3'- -GGCuGCUuGAGGUU------CCUUCgCUUCAg -5'
1510 3' -50.6 NC_001335.1 + 37883 0.71 0.707125
Target:  5'- aCCgGGCGAACUCCAuaccGGCGucGUCg -3'
miRNA:   3'- -GG-CUGCUUGAGGUuccuUCGCuuCAG- -5'
1510 3' -50.6 NC_001335.1 + 39309 0.68 0.857438
Target:  5'- -gGACGcGCgugCCGAGGGcGGCGAagaGGUCu -3'
miRNA:   3'- ggCUGCuUGa--GGUUCCU-UCGCU---UCAG- -5'
1510 3' -50.6 NC_001335.1 + 39936 0.66 0.934932
Target:  5'- aCGACGGcCUgCAguGGGAGGCGAu--- -3'
miRNA:   3'- gGCUGCUuGAgGU--UCCUUCGCUucag -5'
1510 3' -50.6 NC_001335.1 + 40035 0.67 0.889532
Target:  5'- gUCGACGuuCUCCucGGAgacguugcgGGCGAGGcCg -3'
miRNA:   3'- -GGCUGCuuGAGGuuCCU---------UCGCUUCaG- -5'
1510 3' -50.6 NC_001335.1 + 40780 1.12 0.002042
Target:  5'- uCCGACGAACUCCAAGGAAGCGAAGUCu -3'
miRNA:   3'- -GGCUGCUUGAGGUUCCUUCGCUUCAG- -5'
1510 3' -50.6 NC_001335.1 + 46486 0.68 0.857438
Target:  5'- gCCGugGAAUcggCCGgcgGGGGAGCGuuGGUg -3'
miRNA:   3'- -GGCugCUUGa--GGU---UCCUUCGCu-UCAg -5'
1510 3' -50.6 NC_001335.1 + 47179 0.67 0.903943
Target:  5'- gCCGACGcggucuGGC-CCGAacucGGGAGCGAAGcCc -3'
miRNA:   3'- -GGCUGC------UUGaGGUU----CCUUCGCUUCaG- -5'
1510 3' -50.6 NC_001335.1 + 47304 0.73 0.605859
Target:  5'- aCCaGCGAGCguucCCAugcgAGGAGGaCGAAGUCu -3'
miRNA:   3'- -GGcUGCUUGa---GGU----UCCUUC-GCUUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.