Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1510 | 3' | -50.6 | NC_001335.1 | + | 19222 | 0.72 | 0.66689 |
Target: 5'- aCCGGgGAGC-CCGAcucGGAAGCGAucugcuccucgcgccGGUCg -3' miRNA: 3'- -GGCUgCUUGaGGUU---CCUUCGCU---------------UCAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 11230 | 0.7 | 0.761211 |
Target: 5'- gCCGACcAGCUCCAgacGGGAcuucacugacucAGCGAugcuGUCc -3' miRNA: 3'- -GGCUGcUUGAGGU---UCCU------------UCGCUu---CAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 12500 | 0.69 | 0.781954 |
Target: 5'- uUGGCGAACUCCucGGAaaccucGGCGAAa-- -3' miRNA: 3'- gGCUGCUUGAGGuuCCU------UCGCUUcag -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 39936 | 0.66 | 0.934932 |
Target: 5'- aCGACGGcCUgCAguGGGAGGCGAu--- -3' miRNA: 3'- gGCUGCUuGAgGU--UCCUUCGCUucag -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 12146 | 0.66 | 0.929317 |
Target: 5'- gCCGACGAcCgugCCc--GAGGCGAcguGGUCg -3' miRNA: 3'- -GGCUGCUuGa--GGuucCUUCGCU---UCAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 27885 | 0.66 | 0.929317 |
Target: 5'- aCGGCGAAUgggCguGGuuGAAGCGAacGGUCg -3' miRNA: 3'- gGCUGCUUGa--GguUC--CUUCGCU--UCAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 6727 | 0.66 | 0.923411 |
Target: 5'- gCCGAUGAugUgaGGGGGAGaCGggG-Ca -3' miRNA: 3'- -GGCUGCUugAggUUCCUUC-GCuuCaG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 9857 | 0.66 | 0.917212 |
Target: 5'- gCCGugGGGCUC--GGGGAGCcugGGAccGUCg -3' miRNA: 3'- -GGCugCUUGAGguUCCUUCG---CUU--CAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 21955 | 0.66 | 0.917212 |
Target: 5'- gCCGAUGGcCUCUAGuGGGuuGGUGggGUa -3' miRNA: 3'- -GGCUGCUuGAGGUU-CCU--UCGCuuCAg -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 26242 | 0.66 | 0.910722 |
Target: 5'- gCGgcaGCGGGCUCCAGGccccGAGGCGcGGGUUc -3' miRNA: 3'- gGC---UGCUUGAGGUUC----CUUCGC-UUCAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 11698 | 0.67 | 0.903943 |
Target: 5'- aUCGucGCGAuCUUguGGGggGCGAuGGUCu -3' miRNA: 3'- -GGC--UGCUuGAGguUCCuuCGCU-UCAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 35197 | 0.67 | 0.903943 |
Target: 5'- gCCGAUG--UUCCGGGGAAG-GAAGg- -3' miRNA: 3'- -GGCUGCuuGAGGUUCCUUCgCUUCag -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 32238 | 0.67 | 0.892504 |
Target: 5'- gCCGACGAGCUggCCGAGuucGCGGgccggaacugcuaccGGUCg -3' miRNA: 3'- -GGCUGCUUGA--GGUUCcuuCGCU---------------UCAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 7323 | 0.67 | 0.87641 |
Target: 5'- aCGACGAACgucgggcgguuacccUCCAucgacgcGGGGcuCGAGGUCg -3' miRNA: 3'- gGCUGCUUG---------------AGGU-------UCCUucGCUUCAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 35478 | 0.67 | 0.874014 |
Target: 5'- gCCGcCGAuCUCCGAguucuuGGGAGgGAGGUg -3' miRNA: 3'- -GGCuGCUuGAGGUU------CCUUCgCUUCAg -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 23779 | 0.68 | 0.865855 |
Target: 5'- cCCGcCGccucCUCCGAGGAGGaUGAcGUCg -3' miRNA: 3'- -GGCuGCuu--GAGGUUCCUUC-GCUuCAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 46486 | 0.68 | 0.857438 |
Target: 5'- gCCGugGAAUcggCCGgcgGGGGAGCGuuGGUg -3' miRNA: 3'- -GGCugCUUGa--GGU---UCCUUCGCu-UCAg -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 20086 | 0.68 | 0.838964 |
Target: 5'- gCUGAUGGuCUUCGAGGAucuucuuGGCGguGUCg -3' miRNA: 3'- -GGCUGCUuGAGGUUCCU-------UCGCuuCAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 14772 | 0.68 | 0.829805 |
Target: 5'- gCGGCGAACUCCAgccuuguGGGcgugaugccccAGGCGcauGUCg -3' miRNA: 3'- gGCUGCUUGAGGU-------UCC-----------UUCGCuu-CAG- -5' |
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1510 | 3' | -50.6 | NC_001335.1 | + | 49413 | 0.69 | 0.80204 |
Target: 5'- gCGugGGACUgCCAAcgcugcGGcGGCGAGGUUu -3' miRNA: 3'- gGCugCUUGA-GGUU------CCuUCGCUUCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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