miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1518 3' -55.4 NC_001335.1 + 16661 0.66 0.713637
Target:  5'- uUCGCGCCg--GCGuUGGACAGCgucaggaaCGCCu -3'
miRNA:   3'- gAGUGUGGagaCGC-GCUUGUCG--------GUGG- -5'
1518 3' -55.4 NC_001335.1 + 9035 0.66 0.702842
Target:  5'- aCUCAC-CgUCaGCGCGGAacCAGCCGa- -3'
miRNA:   3'- -GAGUGuGgAGaCGCGCUU--GUCGGUgg -5'
1518 3' -55.4 NC_001335.1 + 11013 0.66 0.702842
Target:  5'- aCUCGaGCCUCUGcCGCuucuACGGCguCCu -3'
miRNA:   3'- -GAGUgUGGAGAC-GCGcu--UGUCGguGG- -5'
1518 3' -55.4 NC_001335.1 + 36423 0.66 0.702842
Target:  5'- gCUCAgUACCUCaaggGUGC-AACAGCCAaCUg -3'
miRNA:   3'- -GAGU-GUGGAGa---CGCGcUUGUCGGU-GG- -5'
1518 3' -55.4 NC_001335.1 + 51730 0.66 0.702842
Target:  5'- --gGCACCaaUUUGCGauuaGGgcuugACAGCCACCc -3'
miRNA:   3'- gagUGUGG--AGACGCg---CU-----UGUCGGUGG- -5'
1518 3' -55.4 NC_001335.1 + 48310 0.66 0.691978
Target:  5'- -cCACACC-CUugGCGUGGGCcagcaggacguGGCCGCUg -3'
miRNA:   3'- gaGUGUGGaGA--CGCGCUUG-----------UCGGUGG- -5'
1518 3' -55.4 NC_001335.1 + 24816 0.66 0.691978
Target:  5'- gUCAgCGCCUCUacgucGCGCucauCGGCUGCCu -3'
miRNA:   3'- gAGU-GUGGAGA-----CGCGcuu-GUCGGUGG- -5'
1518 3' -55.4 NC_001335.1 + 15356 0.66 0.691978
Target:  5'- -aUACAgCUCUGCGCGGAuacggggaucCGGCU-CCu -3'
miRNA:   3'- gaGUGUgGAGACGCGCUU----------GUCGGuGG- -5'
1518 3' -55.4 NC_001335.1 + 24211 0.66 0.691978
Target:  5'- -cCACGCCUg-GcCGCGAGC-GCCAgCa -3'
miRNA:   3'- gaGUGUGGAgaC-GCGCUUGuCGGUgG- -5'
1518 3' -55.4 NC_001335.1 + 5936 0.66 0.681055
Target:  5'- -gCugGCCUgUGCcguggacgGUGAACAGCCAg- -3'
miRNA:   3'- gaGugUGGAgACG--------CGCUUGUCGGUgg -5'
1518 3' -55.4 NC_001335.1 + 265 0.66 0.681055
Target:  5'- -cCGCACaggCgGCGCGAuaagaGC-GCCACCa -3'
miRNA:   3'- gaGUGUGga-GaCGCGCU-----UGuCGGUGG- -5'
1518 3' -55.4 NC_001335.1 + 32903 0.66 0.67996
Target:  5'- cCUCgGCugCUgUGCGCGAcucgaugGCGGuccagcacuCCACCg -3'
miRNA:   3'- -GAG-UGugGAgACGCGCU-------UGUC---------GGUGG- -5'
1518 3' -55.4 NC_001335.1 + 38078 0.66 0.670086
Target:  5'- aUCAcCGCCgagCUGUGUGGGCuGCCGa- -3'
miRNA:   3'- gAGU-GUGGa--GACGCGCUUGuCGGUgg -5'
1518 3' -55.4 NC_001335.1 + 28775 0.67 0.637005
Target:  5'- uCUCucaGCCUCUGagGCGGGCAGagaCGCg -3'
miRNA:   3'- -GAGug-UGGAGACg-CGCUUGUCg--GUGg -5'
1518 3' -55.4 NC_001335.1 + 23823 0.67 0.614911
Target:  5'- uCUC-CACCUCUGCcccaGCcguCAGCCaggGCCa -3'
miRNA:   3'- -GAGuGUGGAGACG----CGcuuGUCGG---UGG- -5'
1518 3' -55.4 NC_001335.1 + 29159 0.68 0.592877
Target:  5'- --gGCACCUgggCUGCGUcAGCGGUCAUCu -3'
miRNA:   3'- gagUGUGGA---GACGCGcUUGUCGGUGG- -5'
1518 3' -55.4 NC_001335.1 + 2220 0.68 0.560098
Target:  5'- gUgGCcguUCUCUGCGaCGAACgcccgaggGGCCACCu -3'
miRNA:   3'- gAgUGu--GGAGACGC-GCUUG--------UCGGUGG- -5'
1518 3' -55.4 NC_001335.1 + 45408 0.68 0.549277
Target:  5'- aCUCAucCugCUCgaacgGCGCGGGCucgucauGCCACg -3'
miRNA:   3'- -GAGU--GugGAGa----CGCGCUUGu------CGGUGg -5'
1518 3' -55.4 NC_001335.1 + 47823 0.68 0.549277
Target:  5'- cCUCgaaACCUCgagggGUuCGAACGGCCACUc -3'
miRNA:   3'- -GAGug-UGGAGa----CGcGCUUGUCGGUGG- -5'
1518 3' -55.4 NC_001335.1 + 31782 0.68 0.549277
Target:  5'- cCUCGCggGCCUgcUUGCGCGGcaAGCC-CCg -3'
miRNA:   3'- -GAGUG--UGGA--GACGCGCUugUCGGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.