Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1518 | 3' | -55.4 | NC_001335.1 | + | 37702 | 0.7 | 0.444768 |
Target: 5'- -gUACACCgugaccgGCGCGAACAGCguucucacgugagCACCa -3' miRNA: 3'- gaGUGUGGaga----CGCGCUUGUCG-------------GUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 48274 | 0.7 | 0.435986 |
Target: 5'- gCUCGCGCCguaccUUGuCGCGGcCGGCCgGCCg -3' miRNA: 3'- -GAGUGUGGa----GAC-GCGCUuGUCGG-UGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 20766 | 0.7 | 0.426347 |
Target: 5'- uUCACGCUgUCaGCGUucGCAGCCAUCg -3' miRNA: 3'- gAGUGUGG-AGaCGCGcuUGUCGGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 49866 | 0.76 | 0.207507 |
Target: 5'- gUCGaGCCUCUGCGagugcaGGuagACAGCCGCCg -3' miRNA: 3'- gAGUgUGGAGACGCg-----CU---UGUCGGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 44127 | 1.11 | 0.000645 |
Target: 5'- cCUCACACCUCUGCGCGAACAGCCACCc -3' miRNA: 3'- -GAGUGUGGAGACGCGCUUGUCGGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 31782 | 0.68 | 0.549277 |
Target: 5'- cCUCGCggGCCUgcUUGCGCGGcaAGCC-CCg -3' miRNA: 3'- -GAGUG--UGGA--GACGCGCUugUCGGuGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 48310 | 0.66 | 0.691978 |
Target: 5'- -cCACACC-CUugGCGUGGGCcagcaggacguGGCCGCUg -3' miRNA: 3'- gaGUGUGGaGA--CGCGCUUG-----------UCGGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 28775 | 0.67 | 0.637005 |
Target: 5'- uCUCucaGCCUCUGagGCGGGCAGagaCGCg -3' miRNA: 3'- -GAGug-UGGAGACg-CGCUUGUCg--GUGg -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 29159 | 0.68 | 0.592877 |
Target: 5'- --gGCACCUgggCUGCGUcAGCGGUCAUCu -3' miRNA: 3'- gagUGUGGA---GACGCGcUUGUCGGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 47823 | 0.68 | 0.549277 |
Target: 5'- cCUCgaaACCUCgagggGUuCGAACGGCCACUc -3' miRNA: 3'- -GAGug-UGGAGa----CGcGCUUGUCGGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 50397 | 0.7 | 0.465636 |
Target: 5'- cCUCACACCgcgaaCcGuCGCGG--GGCCACCg -3' miRNA: 3'- -GAGUGUGGa----GaC-GCGCUugUCGGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 265 | 0.66 | 0.681055 |
Target: 5'- -cCGCACaggCgGCGCGAuaagaGC-GCCACCa -3' miRNA: 3'- gaGUGUGga-GaCGCGCU-----UGuCGGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 16932 | 0.69 | 0.481872 |
Target: 5'- gCUCACGCCggccuuccagacgCUG-GCGAGCAcGCCGgCa -3' miRNA: 3'- -GAGUGUGGa------------GACgCGCUUGU-CGGUgG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 45408 | 0.68 | 0.549277 |
Target: 5'- aCUCAucCugCUCgaacgGCGCGGGCucgucauGCCACg -3' miRNA: 3'- -GAGU--GugGAGa----CGCGCUUGu------CGGUGg -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 24816 | 0.66 | 0.691978 |
Target: 5'- gUCAgCGCCUCUacgucGCGCucauCGGCUGCCu -3' miRNA: 3'- gAGU-GUGGAGA-----CGCGcuu-GUCGGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 12740 | 0.69 | 0.517239 |
Target: 5'- uUCuGCGCCUCgUGCGUaacccGGAgGGCUACCu -3' miRNA: 3'- gAG-UGUGGAG-ACGCG-----CUUgUCGGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 48465 | 0.7 | 0.435986 |
Target: 5'- gUCAUgagACCUCcagUGUGCGAACGGCCu-- -3' miRNA: 3'- gAGUG---UGGAG---ACGCGCUUGUCGGugg -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 8083 | 0.71 | 0.398208 |
Target: 5'- aCUCcuuCACgUCgGCGCGGAacGCCACCa -3' miRNA: 3'- -GAGu--GUGgAGaCGCGCUUguCGGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 35520 | 0.7 | 0.455634 |
Target: 5'- gCUCAUcgagaACCccgagCUGCGCGAuggcuaccucuACgAGCCGCCg -3' miRNA: 3'- -GAGUG-----UGGa----GACGCGCU-----------UG-UCGGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 1202 | 0.68 | 0.546043 |
Target: 5'- gCUCcaGCGCCUCUGCgguuGCGugcuccgguuccggGACcggGGCCGCCu -3' miRNA: 3'- -GAG--UGUGGAGACG----CGC--------------UUG---UCGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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