Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1518 | 3' | -55.4 | NC_001335.1 | + | 16661 | 0.66 | 0.713637 |
Target: 5'- uUCGCGCCg--GCGuUGGACAGCgucaggaaCGCCu -3' miRNA: 3'- gAGUGUGGagaCGC-GCUUGUCG--------GUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 5360 | 0.73 | 0.32128 |
Target: 5'- gCUCACcgagAUCgcCUGCGCGAGCGcGCCGCUc -3' miRNA: 3'- -GAGUG----UGGa-GACGCGCUUGU-CGGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 8083 | 0.71 | 0.398208 |
Target: 5'- aCUCcuuCACgUCgGCGCGGAacGCCACCa -3' miRNA: 3'- -GAGu--GUGgAGaCGCGCUUguCGGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 35520 | 0.7 | 0.455634 |
Target: 5'- gCUCAUcgagaACCccgagCUGCGCGAuggcuaccucuACgAGCCGCCg -3' miRNA: 3'- -GAGUG-----UGGa----GACGCGCU-----------UG-UCGGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 1202 | 0.68 | 0.546043 |
Target: 5'- gCUCcaGCGCCUCUGCgguuGCGugcuccgguuccggGACcggGGCCGCCu -3' miRNA: 3'- -GAG--UGUGGAGACG----CGC--------------UUG---UCGGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 2220 | 0.68 | 0.560098 |
Target: 5'- gUgGCcguUCUCUGCGaCGAACgcccgaggGGCCACCu -3' miRNA: 3'- gAgUGu--GGAGACGC-GCUUG--------UCGGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 23823 | 0.67 | 0.614911 |
Target: 5'- uCUC-CACCUCUGCcccaGCcguCAGCCaggGCCa -3' miRNA: 3'- -GAGuGUGGAGACG----CGcuuGUCGG---UGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 38078 | 0.66 | 0.670086 |
Target: 5'- aUCAcCGCCgagCUGUGUGGGCuGCCGa- -3' miRNA: 3'- gAGU-GUGGa--GACGCGCUUGuCGGUgg -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 32903 | 0.66 | 0.67996 |
Target: 5'- cCUCgGCugCUgUGCGCGAcucgaugGCGGuccagcacuCCACCg -3' miRNA: 3'- -GAG-UGugGAgACGCGCU-------UGUC---------GGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 5936 | 0.66 | 0.681055 |
Target: 5'- -gCugGCCUgUGCcguggacgGUGAACAGCCAg- -3' miRNA: 3'- gaGugUGGAgACG--------CGCUUGUCGGUgg -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 9035 | 0.66 | 0.702842 |
Target: 5'- aCUCAC-CgUCaGCGCGGAacCAGCCGa- -3' miRNA: 3'- -GAGUGuGgAGaCGCGCUU--GUCGGUgg -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 11013 | 0.66 | 0.702842 |
Target: 5'- aCUCGaGCCUCUGcCGCuucuACGGCguCCu -3' miRNA: 3'- -GAGUgUGGAGAC-GCGcu--UGUCGguGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 36423 | 0.66 | 0.702842 |
Target: 5'- gCUCAgUACCUCaaggGUGC-AACAGCCAaCUg -3' miRNA: 3'- -GAGU-GUGGAGa---CGCGcUUGUCGGU-GG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 51730 | 0.66 | 0.702842 |
Target: 5'- --gGCACCaaUUUGCGauuaGGgcuugACAGCCACCc -3' miRNA: 3'- gagUGUGG--AGACGCg---CU-----UGUCGGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 15356 | 0.66 | 0.691978 |
Target: 5'- -aUACAgCUCUGCGCGGAuacggggaucCGGCU-CCu -3' miRNA: 3'- gaGUGUgGAGACGCGCUU----------GUCGGuGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 24211 | 0.66 | 0.691978 |
Target: 5'- -cCACGCCUg-GcCGCGAGC-GCCAgCa -3' miRNA: 3'- gaGUGUGGAgaC-GCGCUUGuCGGUgG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 48310 | 0.66 | 0.691978 |
Target: 5'- -cCACACC-CUugGCGUGGGCcagcaggacguGGCCGCUg -3' miRNA: 3'- gaGUGUGGaGA--CGCGCUUG-----------UCGGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 49866 | 0.76 | 0.207507 |
Target: 5'- gUCGaGCCUCUGCGagugcaGGuagACAGCCGCCg -3' miRNA: 3'- gAGUgUGGAGACGCg-----CU---UGUCGGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 20766 | 0.7 | 0.426347 |
Target: 5'- uUCACGCUgUCaGCGUucGCAGCCAUCg -3' miRNA: 3'- gAGUGUGG-AGaCGCGcuUGUCGGUGG- -5' |
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1518 | 3' | -55.4 | NC_001335.1 | + | 48274 | 0.7 | 0.435986 |
Target: 5'- gCUCGCGCCguaccUUGuCGCGGcCGGCCgGCCg -3' miRNA: 3'- -GAGUGUGGa----GAC-GCGCUuGUCGG-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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