Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1519 | 3' | -56.4 | NC_001335.1 | + | 41933 | 0.66 | 0.604529 |
Target: 5'- gUUUGCGGCCu-GGCCGauccgaGaUCCA-CCCg -3' miRNA: 3'- -AAACGCUGGcuUCGGCg-----C-AGGUaGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 23258 | 0.66 | 0.611117 |
Target: 5'- -gUGCccuGGCCGAGGuuGCGguuacgagccuggCCuUCCCa -3' miRNA: 3'- aaACG---CUGGCUUCggCGCa------------GGuAGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 22468 | 0.66 | 0.615513 |
Target: 5'- -cUGCauUCGAGGCUGCGgucugcagccacUCCAUCUCa -3' miRNA: 3'- aaACGcuGGCUUCGGCGC------------AGGUAGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 7571 | 0.66 | 0.615513 |
Target: 5'- -gUGuCGGCCGgcGCuuccagCGCGUCguacauCAUCCCg -3' miRNA: 3'- aaAC-GCUGGCuuCG------GCGCAG------GUAGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 11227 | 0.66 | 0.615513 |
Target: 5'- --cGCGGCgGuAAGCCGC--CgAUCCCg -3' miRNA: 3'- aaaCGCUGgC-UUCGGCGcaGgUAGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 14474 | 0.66 | 0.62651 |
Target: 5'- -gUGUGGCCGAcGCU-CGUCCAaCCg -3' miRNA: 3'- aaACGCUGGCUuCGGcGCAGGUaGGg -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 3115 | 0.66 | 0.637513 |
Target: 5'- --aGCGGCgGGAGCUGaugGUCC--CCCg -3' miRNA: 3'- aaaCGCUGgCUUCGGCg--CAGGuaGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 47778 | 0.66 | 0.637513 |
Target: 5'- --cGCGG-CGuuGCUGCGgugaugcCCGUCCCa -3' miRNA: 3'- aaaCGCUgGCuuCGGCGCa------GGUAGGG- -5' |
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1519 | 3' | -56.4 | NC_001335.1 | + | 2853 | 0.66 | 0.648511 |
Target: 5'- -gUGCGGCCGucguGGCUuagauCGcCCAUCUCg -3' miRNA: 3'- aaACGCUGGCu---UCGGc----GCaGGUAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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