Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1525 | 5' | -56.6 | NC_001335.1 | + | 51572 | 1.15 | 0.000333 |
Target: 5'- cGGCACCGGCACGAUCCUCUCGGAUCCg -3' miRNA: 3'- -CCGUGGCCGUGCUAGGAGAGCCUAGG- -5' |
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1525 | 5' | -56.6 | NC_001335.1 | + | 42338 | 0.78 | 0.131357 |
Target: 5'- cGGCcgACCGGCGCGAgccgcgugCgUCUCGGcGUCCa -3' miRNA: 3'- -CCG--UGGCCGUGCUa-------GgAGAGCC-UAGG- -5' |
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1525 | 5' | -56.6 | NC_001335.1 | + | 42315 | 0.75 | 0.206995 |
Target: 5'- --gACCGGCACGAuUCCUgCUgCGGAUUCg -3' miRNA: 3'- ccgUGGCCGUGCU-AGGA-GA-GCCUAGG- -5' |
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1525 | 5' | -56.6 | NC_001335.1 | + | 16955 | 0.75 | 0.218036 |
Target: 5'- uGGCgagcacGCCGGCACGAUgCUCacCGGAgcccUCCa -3' miRNA: 3'- -CCG------UGGCCGUGCUAgGAGa-GCCU----AGG- -5' |
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1525 | 5' | -56.6 | NC_001335.1 | + | 40126 | 0.75 | 0.218036 |
Target: 5'- gGGCucuCCGGguCGAUCCgCUugUGGGUCCa -3' miRNA: 3'- -CCGu--GGCCguGCUAGGaGA--GCCUAGG- -5' |
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1525 | 5' | -56.6 | NC_001335.1 | + | 26696 | 0.73 | 0.295153 |
Target: 5'- gGGCAUCaGCGCGGUCCUCcgugcuucaUCGGuugucUCCc -3' miRNA: 3'- -CCGUGGcCGUGCUAGGAG---------AGCCu----AGG- -5' |
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1525 | 5' | -56.6 | NC_001335.1 | + | 435 | 0.73 | 0.302458 |
Target: 5'- cGCACUGGCGCGG-CCUUga-GAUCCg -3' miRNA: 3'- cCGUGGCCGUGCUaGGAGagcCUAGG- -5' |
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1525 | 5' | -56.6 | NC_001335.1 | + | 31751 | 0.71 | 0.357468 |
Target: 5'- aGGCccGCUGGCACGAggCCg--CGGAUgCCg -3' miRNA: 3'- -CCG--UGGCCGUGCUa-GGagaGCCUA-GG- -5' |
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1525 | 5' | -56.6 | NC_001335.1 | + | 25128 | 0.71 | 0.369279 |
Target: 5'- uGGCGCUGGCGgcugccuucuucgccCGGUCCUgUggagGGGUCCa -3' miRNA: 3'- -CCGUGGCCGU---------------GCUAGGAgAg---CCUAGG- -5' |
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1525 | 5' | -56.6 | NC_001335.1 | + | 28394 | 0.7 | 0.419124 |
Target: 5'- cGCACCGGCgGCGuacaccUCCUCgucguUCGGccAUCCg -3' miRNA: 3'- cCGUGGCCG-UGCu-----AGGAG-----AGCC--UAGG- -5' |
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1525 | 5' | -56.6 | NC_001335.1 | + | 6213 | 0.69 | 0.47681 |
Target: 5'- aGGaACCGGUgcaguCGA-CCUCUCGGGUUg -3' miRNA: 3'- -CCgUGGCCGu----GCUaGGAGAGCCUAGg -5' |
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1525 | 5' | -56.6 | NC_001335.1 | + | 22754 | 0.69 | 0.47681 |
Target: 5'- uGGCcguCGGCACGGUaguacCCUCggccgcUGGAUCCg -3' miRNA: 3'- -CCGug-GCCGUGCUA-----GGAGa-----GCCUAGG- -5' |
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1525 | 5' | -56.6 | NC_001335.1 | + | 17146 | 0.69 | 0.47681 |
Target: 5'- cGGCGCUGGCgACGG-CC-CUCGG--CCa -3' miRNA: 3'- -CCGUGGCCG-UGCUaGGaGAGCCuaGG- -5' |
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1525 | 5' | -56.6 | NC_001335.1 | + | 13379 | 0.69 | 0.496904 |
Target: 5'- cGCACCGGUA-GAcCUUCUCGG-UCUc -3' miRNA: 3'- cCGUGGCCGUgCUaGGAGAGCCuAGG- -5' |
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1525 | 5' | -56.6 | NC_001335.1 | + | 33754 | 0.69 | 0.507092 |
Target: 5'- cGCAUCGGCGUGggUCaUCUCGGAguugCCu -3' miRNA: 3'- cCGUGGCCGUGCuaGG-AGAGCCUa---GG- -5' |
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1525 | 5' | -56.6 | NC_001335.1 | + | 18097 | 0.68 | 0.537116 |
Target: 5'- cGCACCGGUcgacuucgcgaaaGCGAcuggcaagcaguUCCUUUCGGAcaUCg -3' miRNA: 3'- cCGUGGCCG-------------UGCU------------AGGAGAGCCU--AGg -5' |
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1525 | 5' | -56.6 | NC_001335.1 | + | 9876 | 0.68 | 0.559236 |
Target: 5'- cGGCugUGGCuucgGCGGUgCCguggggCUCGGGgagCCu -3' miRNA: 3'- -CCGugGCCG----UGCUA-GGa-----GAGCCUa--GG- -5' |
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1525 | 5' | -56.6 | NC_001335.1 | + | 48814 | 0.68 | 0.559236 |
Target: 5'- cGGCgACCGGaCGCGGUagCUUCUCcGGUCa -3' miRNA: 3'- -CCG-UGGCC-GUGCUA--GGAGAGcCUAGg -5' |
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1525 | 5' | -56.6 | NC_001335.1 | + | 23310 | 0.68 | 0.574124 |
Target: 5'- uGCGCCGGUAgGAUCgUugucggugaucgucaCUCGGGUgaCCg -3' miRNA: 3'- cCGUGGCCGUgCUAGgA---------------GAGCCUA--GG- -5' |
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1525 | 5' | -56.6 | NC_001335.1 | + | 37126 | 0.67 | 0.590175 |
Target: 5'- uGGCGuuGGUgACGGUCUUCacaUCGGcaggaacGUCCa -3' miRNA: 3'- -CCGUggCCG-UGCUAGGAG---AGCC-------UAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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