miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1537 5' -55.7 NC_001347.2 + 172465 0.66 0.971588
Target:  5'- uGGCCAGGAUGCUCaAGugguACCaCUGGc -3'
miRNA:   3'- gCCGGUCUUGCGAGcUUu---UGGgGGCU- -5'
1537 5' -55.7 NC_001347.2 + 59819 0.66 0.971588
Target:  5'- aGGCCuacgccguGGGGCaGUUUGAGcAGCCCaCCGAg -3'
miRNA:   3'- gCCGG--------UCUUG-CGAGCUU-UUGGG-GGCU- -5'
1537 5' -55.7 NC_001347.2 + 163612 0.66 0.971588
Target:  5'- aGGCCAGugucAGCGC-CGAGccgcGGCUgCCCGGg -3'
miRNA:   3'- gCCGGUC----UUGCGaGCUU----UUGG-GGGCU- -5'
1537 5' -55.7 NC_001347.2 + 112132 0.66 0.968768
Target:  5'- cCGGCCuGAGCGCgcucagcuaccUUGGc-ACCUCCGGa -3'
miRNA:   3'- -GCCGGuCUUGCG-----------AGCUuuUGGGGGCU- -5'
1537 5' -55.7 NC_001347.2 + 80142 0.66 0.965754
Target:  5'- uGaGCCGGAaaaaccgcagGCcCUCGGAAGCCaCCCGc -3'
miRNA:   3'- gC-CGGUCU----------UGcGAGCUUUUGG-GGGCu -5'
1537 5' -55.7 NC_001347.2 + 192257 0.66 0.962541
Target:  5'- cCGGCCcGAGCGCgcCGggGAgaagaaccucUUCCCGGg -3'
miRNA:   3'- -GCCGGuCUUGCGa-GCuuUU----------GGGGGCU- -5'
1537 5' -55.7 NC_001347.2 + 142187 0.66 0.962209
Target:  5'- uGGCCGuguacgagauucuGAGCGUgcgCGAggAGAUCCCCGc -3'
miRNA:   3'- gCCGGU-------------CUUGCGa--GCU--UUUGGGGGCu -5'
1537 5' -55.7 NC_001347.2 + 131861 0.66 0.9555
Target:  5'- uCGGcCCGGuGCGa-CGGAGGgCCCCGAc -3'
miRNA:   3'- -GCC-GGUCuUGCgaGCUUUUgGGGGCU- -5'
1537 5' -55.7 NC_001347.2 + 135407 0.66 0.9555
Target:  5'- gCGGCCGGAcC-CUCGAGAggggggaggggaGCCCaaCCGGa -3'
miRNA:   3'- -GCCGGUCUuGcGAGCUUU------------UGGG--GGCU- -5'
1537 5' -55.7 NC_001347.2 + 199686 0.66 0.9555
Target:  5'- cCGGCCuuGGGuguCGC-CGgcGAgCCCCGAg -3'
miRNA:   3'- -GCCGG--UCUu--GCGaGCuuUUgGGGGCU- -5'
1537 5' -55.7 NC_001347.2 + 169082 0.66 0.9555
Target:  5'- uCGGCCAGcACGCgcugccugcUCGAAAGCguguacacggCCUCGGc -3'
miRNA:   3'- -GCCGGUCuUGCG---------AGCUUUUG----------GGGGCU- -5'
1537 5' -55.7 NC_001347.2 + 134352 0.67 0.951663
Target:  5'- uCGGCCAGGGgGUacCGAGGcgguGCCCgCGAc -3'
miRNA:   3'- -GCCGGUCUUgCGa-GCUUU----UGGGgGCU- -5'
1537 5' -55.7 NC_001347.2 + 144440 0.67 0.94761
Target:  5'- -uGCCAGAugGCaCGggGggcgacGgCCCCGAg -3'
miRNA:   3'- gcCGGUCUugCGaGCuuU------UgGGGGCU- -5'
1537 5' -55.7 NC_001347.2 + 135374 0.67 0.94761
Target:  5'- gCGGCUAG---GC-CGAgGGACCCCCGGu -3'
miRNA:   3'- -GCCGGUCuugCGaGCU-UUUGGGGGCU- -5'
1537 5' -55.7 NC_001347.2 + 147905 0.67 0.943339
Target:  5'- gGGCCguGGGugGCgCGGugGCCUCCGu -3'
miRNA:   3'- gCCGG--UCUugCGaGCUuuUGGGGGCu -5'
1537 5' -55.7 NC_001347.2 + 94768 0.67 0.938847
Target:  5'- aGGCgGucGCGCUCGAccACCuCCUGGa -3'
miRNA:   3'- gCCGgUcuUGCGAGCUuuUGG-GGGCU- -5'
1537 5' -55.7 NC_001347.2 + 202938 0.67 0.934133
Target:  5'- aCGGCUAGuaaGCUCaaGAuccauAGCCUCCGAg -3'
miRNA:   3'- -GCCGGUCuugCGAG--CUu----UUGGGGGCU- -5'
1537 5' -55.7 NC_001347.2 + 174221 0.67 0.93365
Target:  5'- aCGGCagcgucaCAGAggGCGUUCGGAcGACCUCCGc -3'
miRNA:   3'- -GCCG-------GUCU--UGCGAGCUU-UUGGGGGCu -5'
1537 5' -55.7 NC_001347.2 + 189024 0.68 0.929196
Target:  5'- uGGCCGcgcGAACGCgCGugGGCCCUCa- -3'
miRNA:   3'- gCCGGU---CUUGCGaGCuuUUGGGGGcu -5'
1537 5' -55.7 NC_001347.2 + 200179 0.68 0.928689
Target:  5'- gCGGUgaggacaagaagaCGGAGCGUggugugCGAcGGGCCCCCGGg -3'
miRNA:   3'- -GCCG-------------GUCUUGCGa-----GCU-UUUGGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.