Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1537 | 5' | -55.7 | NC_001347.2 | + | 229291 | 1.09 | 0.005533 |
Target: 5'- gCGGCCAGAACGCUCGAAAACCCCCGAc -3' miRNA: 3'- -GCCGGUCUUGCGAGCUUUUGGGGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 209767 | 0.68 | 0.907208 |
Target: 5'- aCGGCCAGuucuuGCGCUUc--GGCCgCCGGg -3' miRNA: 3'- -GCCGGUCu----UGCGAGcuuUUGGgGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 202938 | 0.67 | 0.934133 |
Target: 5'- aCGGCUAGuaaGCUCaaGAuccauAGCCUCCGAg -3' miRNA: 3'- -GCCGGUCuugCGAG--CUu----UUGGGGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 200179 | 0.68 | 0.928689 |
Target: 5'- gCGGUgaggacaagaagaCGGAGCGUggugugCGAcGGGCCCCCGGg -3' miRNA: 3'- -GCCG-------------GUCUUGCGa-----GCU-UUUGGGGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 199686 | 0.66 | 0.9555 |
Target: 5'- cCGGCCuuGGGuguCGC-CGgcGAgCCCCGAg -3' miRNA: 3'- -GCCGG--UCUu--GCGaGCuuUUgGGGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 192257 | 0.66 | 0.962541 |
Target: 5'- cCGGCCcGAGCGCgcCGggGAgaagaaccucUUCCCGGg -3' miRNA: 3'- -GCCGGuCUUGCGa-GCuuUU----------GGGGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 189024 | 0.68 | 0.929196 |
Target: 5'- uGGCCGcgcGAACGCgCGugGGCCCUCa- -3' miRNA: 3'- gCCGGU---CUUGCGaGCuuUUGGGGGcu -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 185042 | 0.72 | 0.730435 |
Target: 5'- uCGGCCGGcgcGCGCUUGAgcugugcGAugCCCUGGu -3' miRNA: 3'- -GCCGGUCu--UGCGAGCU-------UUugGGGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 177724 | 0.68 | 0.901156 |
Target: 5'- aGGCUcGGACGCcCGAgguGAACCCCauCGAc -3' miRNA: 3'- gCCGGuCUUGCGaGCU---UUUGGGG--GCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 174221 | 0.67 | 0.93365 |
Target: 5'- aCGGCagcgucaCAGAggGCGUUCGGAcGACCUCCGc -3' miRNA: 3'- -GCCG-------GUCU--UGCGAGCUU-UUGGGGGCu -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 172465 | 0.66 | 0.971588 |
Target: 5'- uGGCCAGGAUGCUCaAGugguACCaCUGGc -3' miRNA: 3'- gCCGGUCUUGCGAGcUUu---UGGgGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 169082 | 0.66 | 0.9555 |
Target: 5'- uCGGCCAGcACGCgcugccugcUCGAAAGCguguacacggCCUCGGc -3' miRNA: 3'- -GCCGGUCuUGCG---------AGCUUUUG----------GGGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 165971 | 0.68 | 0.927671 |
Target: 5'- gCGGCCAGGugugcggguucguaGCGCgcacCcAGGACCUCCGGu -3' miRNA: 3'- -GCCGGUCU--------------UGCGa---GcUUUUGGGGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 163612 | 0.66 | 0.971588 |
Target: 5'- aGGCCAGugucAGCGC-CGAGccgcGGCUgCCCGGg -3' miRNA: 3'- gCCGGUC----UUGCGaGCUU----UUGG-GGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 162696 | 0.72 | 0.721837 |
Target: 5'- aGGCCcaAGAGCaGCUCGAGuguGGCCUCCa- -3' miRNA: 3'- gCCGG--UCUUG-CGAGCUU---UUGGGGGcu -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 156816 | 0.71 | 0.785808 |
Target: 5'- gGGCCAGGACG-UCGGAGgguccgcgcgucgGCCUCUGGa -3' miRNA: 3'- gCCGGUCUUGCgAGCUUU-------------UGGGGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 147905 | 0.67 | 0.943339 |
Target: 5'- gGGCCguGGGugGCgCGGugGCCUCCGu -3' miRNA: 3'- gCCGG--UCUugCGaGCUuuUGGGGGCu -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 144440 | 0.67 | 0.94761 |
Target: 5'- -uGCCAGAugGCaCGggGggcgacGgCCCCGAg -3' miRNA: 3'- gcCGGUCUugCGaGCuuU------UgGGGGCU- -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 142187 | 0.66 | 0.962209 |
Target: 5'- uGGCCGuguacgagauucuGAGCGUgcgCGAggAGAUCCCCGc -3' miRNA: 3'- gCCGGU-------------CUUGCGa--GCU--UUUGGGGGCu -5' |
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1537 | 5' | -55.7 | NC_001347.2 | + | 142145 | 0.69 | 0.8748 |
Target: 5'- uGGCgCuGGACGC-CGAGAACuuggauugcgaCCCCGAa -3' miRNA: 3'- gCCG-GuCUUGCGaGCUUUUG-----------GGGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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