Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1538 | 3' | -55.9 | NC_001347.2 | + | 229221 | 0.68 | 0.908341 |
Target: 5'- -nGCAAcccCcGUCCCCGgCCCCAACa- -3' miRNA: 3'- ggCGUUu--GaCAGGGGCaGGGGUUGca -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 229199 | 0.76 | 0.539423 |
Target: 5'- gCGCGAACaG-CCCCGgCCCCAGCGc -3' miRNA: 3'- gGCGUUUGaCaGGGGCaGGGGUUGCa -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 229157 | 1.1 | 0.00488 |
Target: 5'- gCCGCAAACUGUCCCCGUCCCCAACGUa -3' miRNA: 3'- -GGCGUUUGACAGGGGCAGGGGUUGCA- -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 226208 | 0.67 | 0.948241 |
Target: 5'- uCCGCAAgGgUGUUCCUGcCCCCucGACGc -3' miRNA: 3'- -GGCGUU-UgACAGGGGCaGGGG--UUGCa -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 225492 | 0.69 | 0.872115 |
Target: 5'- aUCGCu-GCUG-CCCCGgcguucuccagaagCCCCGGCGg -3' miRNA: 3'- -GGCGuuUGACaGGGGCa-------------GGGGUUGCa -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 203560 | 0.66 | 0.962979 |
Target: 5'- aCCGCGuc----CCCCGUCCCCAccccAUGa -3' miRNA: 3'- -GGCGUuugacaGGGGCAGGGGU----UGCa -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 199900 | 0.67 | 0.950667 |
Target: 5'- cCCGCGugcucgugaaaacGCUGUCCuCCGccuccucaUCCgCCGGCGUg -3' miRNA: 3'- -GGCGUu------------UGACAGG-GGC--------AGG-GGUUGCA- -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 192131 | 0.7 | 0.831278 |
Target: 5'- aCCGCcgucguuGCcgGUCCCCGUuucCUCCGGCGUc -3' miRNA: 3'- -GGCGuu-----UGa-CAGGGGCA---GGGGUUGCA- -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 183900 | 0.68 | 0.919643 |
Target: 5'- -aGCAGGCgccgGUgCUCGUCCCCAAa-- -3' miRNA: 3'- ggCGUUUGa---CAgGGGCAGGGGUUgca -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 182918 | 0.67 | 0.944025 |
Target: 5'- cCUGCu--CUucGUCCUCGUCCCCGAa-- -3' miRNA: 3'- -GGCGuuuGA--CAGGGGCAGGGGUUgca -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 175290 | 0.67 | 0.952241 |
Target: 5'- aCCGCGGACgccGUCgguaCCGUCUCCAccACa- -3' miRNA: 3'- -GGCGUUUGa--CAGg---GGCAGGGGU--UGca -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 174127 | 0.7 | 0.847027 |
Target: 5'- cCCaGCAGACcagCCaCCGUCCCuCAGCGa -3' miRNA: 3'- -GG-CGUUUGacaGG-GGCAGGG-GUUGCa -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 160655 | 0.69 | 0.876309 |
Target: 5'- aCCGCGGcCcgGUCUCUGUUCCCcACGUc -3' miRNA: 3'- -GGCGUUuGa-CAGGGGCAGGGGuUGCA- -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 158550 | 0.68 | 0.914102 |
Target: 5'- aCGCGacguGACgGUCCCgCGUCUCCuGCGc -3' miRNA: 3'- gGCGU----UUGaCAGGG-GCAGGGGuUGCa -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 157371 | 0.67 | 0.934936 |
Target: 5'- aUCGCGAGCUGggcgaCCGUCUcuaCCAACGc -3' miRNA: 3'- -GGCGUUUGACagg--GGCAGG---GGUUGCa -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 156485 | 0.66 | 0.959258 |
Target: 5'- aCCGUAAGCaGUCacagcggcagcggUCCGUCCCUGugGc -3' miRNA: 3'- -GGCGUUUGaCAG-------------GGGCAGGGGUugCa -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 152169 | 0.72 | 0.762141 |
Target: 5'- aCGU--GCUGUCgCCCGUCuuuCCCGGCGg -3' miRNA: 3'- gGCGuuUGACAG-GGGCAG---GGGUUGCa -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 135551 | 0.69 | 0.896166 |
Target: 5'- gCCGuCGAGCcggggcGUCgCCCGUCCCCAccacCGUc -3' miRNA: 3'- -GGC-GUUUGa-----CAG-GGGCAGGGGUu---GCA- -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 127791 | 0.69 | 0.862053 |
Target: 5'- cCCGCcuGCaccGUCgCCGUacaCCCCAGCGUu -3' miRNA: 3'- -GGCGuuUGa--CAGgGGCA---GGGGUUGCA- -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 118860 | 0.68 | 0.908341 |
Target: 5'- uCCGCAGAgcGuUCCCCGUCgaaUCAGCGUc -3' miRNA: 3'- -GGCGUUUgaC-AGGGGCAGg--GGUUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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