Results 41 - 60 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1538 | 5' | -62.1 | NC_001347.2 | + | 87586 | 0.66 | 0.738224 |
Target: 5'- --cCGUGGcCGUGAGCAGaccgcggugcacgCCCGuGCCCa -3' miRNA: 3'- gauGCGCC-GCGCUUGUCg------------GGGC-CGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 199655 | 0.66 | 0.732771 |
Target: 5'- aCUAgGCGGuCGCGAGacuuuaGGCgacuugCCGGCCUu -3' miRNA: 3'- -GAUgCGCC-GCGCUUg-----UCGg-----GGCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 128842 | 0.67 | 0.723621 |
Target: 5'- cCUGaGCGaGCGCGAAC-GCCgC-GCCCg -3' miRNA: 3'- -GAUgCGC-CGCGCUUGuCGGgGcCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 158548 | 0.67 | 0.723621 |
Target: 5'- gUACGCGaCGUG-ACGGUCCCGcGUCUc -3' miRNA: 3'- gAUGCGCcGCGCuUGUCGGGGC-CGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 144450 | 0.67 | 0.723621 |
Target: 5'- -cACGgGGgGCG-ACGGCCCCgagGGCg- -3' miRNA: 3'- gaUGCgCCgCGCuUGUCGGGG---CCGgg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 119092 | 0.67 | 0.723621 |
Target: 5'- -gGCGCaGcCGCGcuauGCGGCCC-GGCCUc -3' miRNA: 3'- gaUGCGcC-GCGCu---UGUCGGGgCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 125302 | 0.67 | 0.714404 |
Target: 5'- ---aGUGGCGCaaccgucGCAGCCgcgCCGGCCUc -3' miRNA: 3'- gaugCGCCGCGcu-----UGUCGG---GGCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 6860 | 0.67 | 0.705127 |
Target: 5'- ----aCGGCGU--GCAGCCgCCGaGCCCg -3' miRNA: 3'- gaugcGCCGCGcuUGUCGG-GGC-CGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 39210 | 0.67 | 0.705127 |
Target: 5'- -aACGCcGCGCGccacACGGCgCCCauGGCCUg -3' miRNA: 3'- gaUGCGcCGCGCu---UGUCG-GGG--CCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 187523 | 0.67 | 0.705127 |
Target: 5'- gUGCGCGaGaCGCuGGucACAGCCaUCGGCCa -3' miRNA: 3'- gAUGCGC-C-GCG-CU--UGUCGG-GGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 136262 | 0.67 | 0.699534 |
Target: 5'- gUGgGCGGaGCGGuaauuuuccaccgccGCGGCCCauGCCCg -3' miRNA: 3'- gAUgCGCCgCGCU---------------UGUCGGGgcCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 112096 | 0.67 | 0.699534 |
Target: 5'- -gACGCGGUaGCGAgGCGGCaacuggcguucaccaCgCCGGCCUg -3' miRNA: 3'- gaUGCGCCG-CGCU-UGUCG---------------G-GGCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 19358 | 0.67 | 0.695795 |
Target: 5'- -aGCGCGGCcgGCGAGCaaaAGCCaugcacGCCCg -3' miRNA: 3'- gaUGCGCCG--CGCUUG---UCGGggc---CGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 180898 | 0.67 | 0.695795 |
Target: 5'- uCUAcCGCGGUgacGUGGAgAGCCUguCGGCCg -3' miRNA: 3'- -GAU-GCGCCG---CGCUUgUCGGG--GCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 157237 | 0.67 | 0.695795 |
Target: 5'- ---aGCGGCGguaGAaacgucGCAGCCaCCGGCgCa -3' miRNA: 3'- gaugCGCCGCg--CU------UGUCGG-GGCCGgG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 704 | 0.67 | 0.695795 |
Target: 5'- aCUGCGUGGCGCcaaGGCGGCgCCaGCa- -3' miRNA: 3'- -GAUGCGCCGCGc--UUGUCGgGGcCGgg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 86901 | 0.67 | 0.695795 |
Target: 5'- -aGCGCGGCGCcauGCucGCCCaggagacaGGCgCCg -3' miRNA: 3'- gaUGCGCCGCGcu-UGu-CGGGg-------CCG-GG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 196259 | 0.67 | 0.686419 |
Target: 5'- uCUACGCGGCcuuuuGCGAguGCGGCgaCgGGCgCg -3' miRNA: 3'- -GAUGCGCCG-----CGCU--UGUCGg-GgCCGgG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 159286 | 0.67 | 0.686419 |
Target: 5'- gUGCugGCGGCGcCGGGC-GCCaCGGCCa -3' miRNA: 3'- gAUG--CGCCGC-GCUUGuCGGgGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 99550 | 0.67 | 0.686419 |
Target: 5'- -cGCGCGGCaGUG-ACAGCuugugaCCCGcGCUCg -3' miRNA: 3'- gaUGCGCCG-CGCuUGUCG------GGGC-CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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