miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1538 5' -62.1 NC_001347.2 + 37061 0.69 0.601103
Target:  5'- -cGCGgaGGUGCuGGCGGCCgUGGCCUg -3'
miRNA:   3'- gaUGCg-CCGCGcUUGUCGGgGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 37262 0.7 0.535584
Target:  5'- uUugGCGGCaGCGgagGugGGCCggGGCCCg -3'
miRNA:   3'- gAugCGCCG-CGC---UugUCGGggCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 37933 0.68 0.647644
Target:  5'- -aGCGCGGCGCGcgggugcaggugcAGCGcGUCCCagcgcGGCCg -3'
miRNA:   3'- gaUGCGCCGCGC-------------UUGU-CGGGG-----CCGGg -5'
1538 5' -62.1 NC_001347.2 + 38180 0.66 0.750836
Target:  5'- -cGCGCGGCaCGGuccccgAC-GCCgCCGGaCCCg -3'
miRNA:   3'- gaUGCGCCGcGCU------UGuCGG-GGCC-GGG- -5'
1538 5' -62.1 NC_001347.2 + 38471 0.71 0.49836
Target:  5'- --cCGCGcagcccagccaccGCGCGGGCAGCaCCGcGCCCa -3'
miRNA:   3'- gauGCGC-------------CGCGCUUGUCGgGGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 38652 0.68 0.629587
Target:  5'- cCUGCcCGGCGUcuGCAGCgCcaccgucgugCCGGCCCa -3'
miRNA:   3'- -GAUGcGCCGCGcuUGUCG-G----------GGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 38770 0.69 0.610586
Target:  5'- -aGCGuCGcGCGCGGGguGCCCaC-GCCCa -3'
miRNA:   3'- gaUGC-GC-CGCGCUUguCGGG-GcCGGG- -5'
1538 5' -62.1 NC_001347.2 + 39210 0.67 0.705127
Target:  5'- -aACGCcGCGCGccacACGGCgCCCauGGCCUg -3'
miRNA:   3'- gaUGCGcCGCGCu---UGUCG-GGG--CCGGG- -5'
1538 5' -62.1 NC_001347.2 + 39687 0.66 0.750836
Target:  5'- gUGCaCGGCGCGuGCuggcgccGCCuuGGCgCCa -3'
miRNA:   3'- gAUGcGCCGCGCuUGu------CGGggCCG-GG- -5'
1538 5' -62.1 NC_001347.2 + 40092 0.66 0.759737
Target:  5'- -aACGCccgGGgGCGAgggacgACGGCCCUGGggaCCg -3'
miRNA:   3'- gaUGCG---CCgCGCU------UGUCGGGGCCg--GG- -5'
1538 5' -62.1 NC_001347.2 + 40540 0.66 0.741844
Target:  5'- gCUGC-CGGUGCGuuccACGGUCCUuGCCUg -3'
miRNA:   3'- -GAUGcGCCGCGCu---UGUCGGGGcCGGG- -5'
1538 5' -62.1 NC_001347.2 + 41693 0.66 0.759737
Target:  5'- -aACGUGGCGCGu--GGaUgCCGGCCg -3'
miRNA:   3'- gaUGCGCCGCGCuugUC-GgGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 47078 0.68 0.620082
Target:  5'- gCUGCgGCGGCGaaGACAGCUgcgauuugUCGGCCg -3'
miRNA:   3'- -GAUG-CGCCGCgcUUGUCGG--------GGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 47746 0.69 0.602051
Target:  5'- -gACGCGGCGCaccaaugccgaauccAAUAGCCgCCGuGCCUc -3'
miRNA:   3'- gaUGCGCCGCGc--------------UUGUCGG-GGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 59086 0.68 0.657135
Target:  5'- uUugGUGGCGCGGccuccuccucucuGCugAGCUgCGGCCa -3'
miRNA:   3'- gAugCGCCGCGCU-------------UG--UCGGgGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 59464 0.68 0.629587
Target:  5'- -gAUGCGGUGCGGugucGCCUgGGCaCCa -3'
miRNA:   3'- gaUGCGCCGCGCUugu-CGGGgCCG-GG- -5'
1538 5' -62.1 NC_001347.2 + 63824 0.71 0.471869
Target:  5'- -aGCgGCGGCgGCGAugGCGGggcugguugcuuuUCCCGGCCCu -3'
miRNA:   3'- gaUG-CGCCG-CGCU--UGUC-------------GGGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 65173 0.69 0.563427
Target:  5'- aUGCGCGGCuacaGCGAguGCGGCgaUGGCUCg -3'
miRNA:   3'- gAUGCGCCG----CGCU--UGUCGggGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 67018 0.66 0.77724
Target:  5'- -aACGcCGGCuGCGGagACAGCUgCGGCg- -3'
miRNA:   3'- gaUGC-GCCG-CGCU--UGUCGGgGCCGgg -5'
1538 5' -62.1 NC_001347.2 + 73575 0.66 0.768541
Target:  5'- -gGCGCGcaCGCGGACAaagacCCaCCGGCCa -3'
miRNA:   3'- gaUGCGCc-GCGCUUGUc----GG-GGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.