miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1538 5' -62.1 NC_001347.2 + 227 0.66 0.785827
Target:  5'- ---gGCGGUGUGcGCGGCCUCGGg-- -3'
miRNA:   3'- gaugCGCCGCGCuUGUCGGGGCCggg -5'
1538 5' -62.1 NC_001347.2 + 704 0.67 0.695795
Target:  5'- aCUGCGUGGCGCcaaGGCGGCgCCaGCa- -3'
miRNA:   3'- -GAUGCGCCGCGc--UUGUCGgGGcCGgg -5'
1538 5' -62.1 NC_001347.2 + 1209 0.66 0.77724
Target:  5'- -cGCGCGGCGUuuuuggccAACAGCaCgGGCCg -3'
miRNA:   3'- gaUGCGCCGCGc-------UUGUCGgGgCCGGg -5'
1538 5' -62.1 NC_001347.2 + 2159 0.66 0.750836
Target:  5'- -gGgGCGGaCGCGGcaGCAGCagCGGCgCCg -3'
miRNA:   3'- gaUgCGCC-GCGCU--UGUCGggGCCG-GG- -5'
1538 5' -62.1 NC_001347.2 + 5568 0.75 0.278854
Target:  5'- uUGCGCGGUGgGGGCGuGCCCCGcagacCCCg -3'
miRNA:   3'- gAUGCGCCGCgCUUGU-CGGGGCc----GGG- -5'
1538 5' -62.1 NC_001347.2 + 6860 0.67 0.705127
Target:  5'- ----aCGGCGU--GCAGCCgCCGaGCCCg -3'
miRNA:   3'- gaugcGCCGCGcuUGUCGG-GGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 7119 0.66 0.77724
Target:  5'- -gGCGUucuuucccaacGGCGUGGACGGUCuCCGGUg- -3'
miRNA:   3'- gaUGCG-----------CCGCGCUUGUCGG-GGCCGgg -5'
1538 5' -62.1 NC_001347.2 + 12001 0.66 0.785827
Target:  5'- uUugGCaGCGCGGcugucaccgACGGgCCCGaaacGCCCu -3'
miRNA:   3'- gAugCGcCGCGCU---------UGUCgGGGC----CGGG- -5'
1538 5' -62.1 NC_001347.2 + 13507 0.69 0.563427
Target:  5'- -aACGCcgGGUGCucacccgccGGGCGGCCCgGGCCg -3'
miRNA:   3'- gaUGCG--CCGCG---------CUUGUCGGGgCCGGg -5'
1538 5' -62.1 NC_001347.2 + 15380 0.69 0.614383
Target:  5'- -gACGCGaGCGCGAgcggcguauucugcaGCAGCaguaugaCUGGCUCu -3'
miRNA:   3'- gaUGCGC-CGCGCU---------------UGUCGg------GGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 15643 0.66 0.759737
Target:  5'- -gGCGCGGaGCGggUGauuaccGCCCUGGUgCa -3'
miRNA:   3'- gaUGCGCCgCGCuuGU------CGGGGCCGgG- -5'
1538 5' -62.1 NC_001347.2 + 17018 0.66 0.77724
Target:  5'- uUugGCaGGCGCGcgUGGUCCgCGGCg- -3'
miRNA:   3'- gAugCG-CCGCGCuuGUCGGG-GCCGgg -5'
1538 5' -62.1 NC_001347.2 + 17329 0.71 0.464061
Target:  5'- -gACGCGguugccGCGCGuAUGGCCgCCGGCCa -3'
miRNA:   3'- gaUGCGC------CGCGCuUGUCGG-GGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 17622 0.7 0.517292
Target:  5'- gUAgGCGGCGCGucccACc-CCCCGGgCCa -3'
miRNA:   3'- gAUgCGCCGCGCu---UGucGGGGCCgGG- -5'
1538 5' -62.1 NC_001347.2 + 19358 0.67 0.695795
Target:  5'- -aGCGCGGCcgGCGAGCaaaAGCCaugcacGCCCg -3'
miRNA:   3'- gaUGCGCCG--CGCUUG---UCGGggc---CGGG- -5'
1538 5' -62.1 NC_001347.2 + 20372 0.69 0.572797
Target:  5'- --cCGCGGCGUGAcCAcGUCaCCGuGCCCc -3'
miRNA:   3'- gauGCGCCGCGCUuGU-CGG-GGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 21766 0.71 0.463198
Target:  5'- uCUGCGCuacGGCGCugGGACuuuggcugcugcgGGCCgCGGCCCc -3'
miRNA:   3'- -GAUGCG---CCGCG--CUUG-------------UCGGgGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 28166 0.71 0.499255
Target:  5'- --cCGUGGCGCGuGACGGCCCCcuaCCUg -3'
miRNA:   3'- gauGCGCCGCGC-UUGUCGGGGcc-GGG- -5'
1538 5' -62.1 NC_001347.2 + 34680 0.7 0.508239
Target:  5'- aCU-CGCGGaCuCGGu--GCCCCGGCCCc -3'
miRNA:   3'- -GAuGCGCC-GcGCUuguCGGGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 36692 0.66 0.750836
Target:  5'- -cGgGUGGCcUGAGCAcGCCgaGGCCCa -3'
miRNA:   3'- gaUgCGCCGcGCUUGU-CGGggCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.