miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1538 5' -62.1 NC_001347.2 + 229191 1.1 0.001263
Target:  5'- cCUACGCGGCGCGAACAGCCCCGGCCCc -3'
miRNA:   3'- -GAUGCGCCGCGCUUGUCGGGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 185126 0.82 0.10455
Target:  5'- --uUGCGGCGCGAGCAGCCgCCGGgCg -3'
miRNA:   3'- gauGCGCCGCGCUUGUCGG-GGCCgGg -5'
1538 5' -62.1 NC_001347.2 + 88039 0.8 0.136476
Target:  5'- gCUGaGCGGCuGCGGaauGCGGCCCgGGCCCg -3'
miRNA:   3'- -GAUgCGCCG-CGCU---UGUCGGGgCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 100875 0.8 0.143171
Target:  5'- -gAgGCGGCGCGGcGCAGCgCCGGCCa -3'
miRNA:   3'- gaUgCGCCGCGCU-UGUCGgGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 187126 0.79 0.173042
Target:  5'- uCUACaGCGGCGCGAuguggUAGCCCUGGUCa -3'
miRNA:   3'- -GAUG-CGCCGCGCUu----GUCGGGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 100187 0.78 0.181334
Target:  5'- aUGCGCGGCGCc-GCGGCCUC-GCCCa -3'
miRNA:   3'- gAUGCGCCGCGcuUGUCGGGGcCGGG- -5'
1538 5' -62.1 NC_001347.2 + 136469 0.76 0.266293
Target:  5'- aUGCGCaGgGCGAcccucccGCgGGCCCUGGCCCg -3'
miRNA:   3'- gAUGCGcCgCGCU-------UG-UCGGGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 5568 0.75 0.278854
Target:  5'- uUGCGCGGUGgGGGCGuGCCCCGcagacCCCg -3'
miRNA:   3'- gAUGCGCCGCgCUUGU-CGGGGCc----GGG- -5'
1538 5' -62.1 NC_001347.2 + 95292 0.73 0.367094
Target:  5'- ---aGCGGCGCGGGCcugacuCCUCGGCCUg -3'
miRNA:   3'- gaugCGCCGCGCUUGuc----GGGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 192196 0.72 0.405791
Target:  5'- --cCGCGGCGCGGGCucggcGUCCCGccGUCCg -3'
miRNA:   3'- gauGCGCCGCGCUUGu----CGGGGC--CGGG- -5'
1538 5' -62.1 NC_001347.2 + 93230 0.72 0.413833
Target:  5'- gCUGaGCGGCaGCGGcgGCA-CCCCGGCUCa -3'
miRNA:   3'- -GAUgCGCCG-CGCU--UGUcGGGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 199777 0.72 0.430208
Target:  5'- uCUugGCGGCGCc-GguGCCgCCGGUCUc -3'
miRNA:   3'- -GAugCGCCGCGcuUguCGG-GGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 168803 0.71 0.445265
Target:  5'- -gACGCGcGCGCGGuggccaaACGGCcgcgcgaCCCGGCCg -3'
miRNA:   3'- gaUGCGC-CGCGCU-------UGUCG-------GGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 153228 0.71 0.446956
Target:  5'- -aGCGUgaGGCGCGGGCGcGCgUCGGCCg -3'
miRNA:   3'- gaUGCG--CCGCGCUUGU-CGgGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 134329 0.71 0.455465
Target:  5'- -cAgGCGGCgaccGCGGACucGCCUCGGCCa -3'
miRNA:   3'- gaUgCGCCG----CGCUUGu-CGGGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 21766 0.71 0.463198
Target:  5'- uCUGCGCuacGGCGCugGGACuuuggcugcugcgGGCCgCGGCCCc -3'
miRNA:   3'- -GAUGCG---CCGCG--CUUG-------------UCGGgGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 17329 0.71 0.464061
Target:  5'- -gACGCGguugccGCGCGuAUGGCCgCCGGCCa -3'
miRNA:   3'- gaUGCGC------CGCGCuUGUCGG-GGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 63824 0.71 0.471869
Target:  5'- -aGCgGCGGCgGCGAugGCGGggcugguugcuuuUCCCGGCCCu -3'
miRNA:   3'- gaUG-CGCCG-CGCU--UGUC-------------GGGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 200200 0.71 0.481502
Target:  5'- -aGCGUGGUGUGcGACgGGCCCCcgGGCUCg -3'
miRNA:   3'- gaUGCGCCGCGC-UUG-UCGGGG--CCGGG- -5'
1538 5' -62.1 NC_001347.2 + 136035 0.71 0.481502
Target:  5'- -cGCGCccGGUGCc--CGGCCCaCGGCCCc -3'
miRNA:   3'- gaUGCG--CCGCGcuuGUCGGG-GCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.