miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1539 3' -44.9 NC_001347.2 + 225457 1.12 0.031372
Target:  5'- cAUAUAAAAACGCAGGGGUUUAGCAGCu -3'
miRNA:   3'- -UAUAUUUUUGCGUCCCCAAAUCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 158733 0.79 0.922765
Target:  5'- -----cAGGCGCGcGGcGGUUUAGCAGCg -3'
miRNA:   3'- uauauuUUUGCGU-CC-CCAAAUCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 203843 0.76 0.974358
Target:  5'- -cGUGGAGGCaGCGGGGGU--GGUAGUa -3'
miRNA:   3'- uaUAUUUUUG-CGUCCCCAaaUCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 151190 0.76 0.976266
Target:  5'- -aGUGGGAACGCGGGaGGgggauucggaggagAGCAGCg -3'
miRNA:   3'- uaUAUUUUUGCGUCC-CCaaa-----------UCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 44394 0.76 0.977051
Target:  5'- ---gGAGAACGCcGGGGc--AGCAGCg -3'
miRNA:   3'- uauaUUUUUGCGuCCCCaaaUCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 44049 0.76 0.97953
Target:  5'- -gGUGGugGCGCuGGGGGU--GGCGGCa -3'
miRNA:   3'- uaUAUUuuUGCG-UCCCCAaaUCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 186129 0.76 0.981804
Target:  5'- ---gAGAGACGUAGGGaGUUU-GUAGCg -3'
miRNA:   3'- uauaUUUUUGCGUCCC-CAAAuCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 142581 0.74 0.994704
Target:  5'- ---cGGGAGCaGCGGGGGcggcgggGGCAGCg -3'
miRNA:   3'- uauaUUUUUG-CGUCCCCaaa----UCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 140528 0.72 0.998924
Target:  5'- ------cGACGCcaaggacGGGGGUUUGGaCGGCa -3'
miRNA:   3'- uauauuuUUGCG-------UCCCCAAAUC-GUCG- -5'
1539 3' -44.9 NC_001347.2 + 39872 0.72 0.998946
Target:  5'- ---gAGGGGCGgGGGGGUguuuUUAGCGGg -3'
miRNA:   3'- uauaUUUUUGCgUCCCCA----AAUCGUCg -5'
1539 3' -44.9 NC_001347.2 + 117989 0.71 0.99965
Target:  5'- ---gAAGAACGCGgacgacacGGuGGUUgUAGCAGCg -3'
miRNA:   3'- uauaUUUUUGCGU--------CC-CCAA-AUCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 228745 0.71 0.99965
Target:  5'- -------cGCGCGGGGGacggGGUAGCc -3'
miRNA:   3'- uauauuuuUGCGUCCCCaaa-UCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 37668 0.7 0.999786
Target:  5'- -----uGAGCGguGGGGgcaucguuGCAGCg -3'
miRNA:   3'- uauauuUUUGCguCCCCaaau----CGUCG- -5'
1539 3' -44.9 NC_001347.2 + 156676 0.7 0.999834
Target:  5'- ------cAugGCGGcGGGUcgUGGCGGCu -3'
miRNA:   3'- uauauuuUugCGUC-CCCAa-AUCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 209408 0.69 0.999945
Target:  5'- ------cGAUGCGGGGGUUcucggGGCGGa -3'
miRNA:   3'- uauauuuUUGCGUCCCCAAa----UCGUCg -5'
1539 3' -44.9 NC_001347.2 + 165059 0.69 0.999973
Target:  5'- ---cAGGAGgGCAacccgggucgacgauGGGGUcgGGCAGCg -3'
miRNA:   3'- uauaUUUUUgCGU---------------CCCCAaaUCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 229685 0.68 0.999978
Target:  5'- gGUGUG--GugGCGGGGuGUgucGGCGGUg -3'
miRNA:   3'- -UAUAUuuUugCGUCCC-CAaa-UCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 82709 0.68 0.999978
Target:  5'- gGUGUAcGggUGguGGcGGUgguGCAGCg -3'
miRNA:   3'- -UAUAUuUuuGCguCC-CCAaauCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 229027 0.68 0.999978
Target:  5'- cGUGUGuuGGGCGUcuGGGUgaAGCGGCg -3'
miRNA:   3'- -UAUAUu-UUUGCGucCCCAaaUCGUCG- -5'
1539 3' -44.9 NC_001347.2 + 206 0.68 0.999978
Target:  5'- gGUGUG--GugGCGGGGuGUgucGGCGGUg -3'
miRNA:   3'- -UAUAUuuUugCGUCCC-CAaa-UCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.