Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1539 | 3' | -44.9 | NC_001347.2 | + | 206 | 0.68 | 0.999978 |
Target: 5'- gGUGUG--GugGCGGGGuGUgucGGCGGUg -3' miRNA: 3'- -UAUAUuuUugCGUCCC-CAaa-UCGUCG- -5' |
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1539 | 3' | -44.9 | NC_001347.2 | + | 7886 | 0.68 | 0.999989 |
Target: 5'- -gGUAGuGAC-CAGGuGGUcagUGGCGGCg -3' miRNA: 3'- uaUAUUuUUGcGUCC-CCAa--AUCGUCG- -5' |
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1539 | 3' | -44.9 | NC_001347.2 | + | 29733 | 0.67 | 0.999998 |
Target: 5'- cUGUuguGGugGCuGGGaGUggUGGCGGCa -3' miRNA: 3'- uAUAuu-UUugCGuCCC-CAa-AUCGUCG- -5' |
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1539 | 3' | -44.9 | NC_001347.2 | + | 36364 | 0.67 | 0.999996 |
Target: 5'- cGUGUucaguuGGGCgGCAGGGGcaugcggccUUAGCGGCu -3' miRNA: 3'- -UAUAuu----UUUG-CGUCCCCa--------AAUCGUCG- -5' |
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1539 | 3' | -44.9 | NC_001347.2 | + | 37300 | 0.68 | 0.999992 |
Target: 5'- -----uAAGCGCGGaGGUUugucUGGCGGCu -3' miRNA: 3'- uauauuUUUGCGUCcCCAA----AUCGUCG- -5' |
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1539 | 3' | -44.9 | NC_001347.2 | + | 37668 | 0.7 | 0.999786 |
Target: 5'- -----uGAGCGguGGGGgcaucguuGCAGCg -3' miRNA: 3'- uauauuUUUGCguCCCCaaau----CGUCG- -5' |
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1539 | 3' | -44.9 | NC_001347.2 | + | 39511 | 0.68 | 0.999989 |
Target: 5'- ----cAAGGgGCGGGGGgc--GCGGCg -3' miRNA: 3'- uauauUUUUgCGUCCCCaaauCGUCG- -5' |
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1539 | 3' | -44.9 | NC_001347.2 | + | 39872 | 0.72 | 0.998946 |
Target: 5'- ---gAGGGGCGgGGGGGUguuuUUAGCGGg -3' miRNA: 3'- uauaUUUUUGCgUCCCCA----AAUCGUCg -5' |
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1539 | 3' | -44.9 | NC_001347.2 | + | 44049 | 0.76 | 0.97953 |
Target: 5'- -gGUGGugGCGCuGGGGGU--GGCGGCa -3' miRNA: 3'- uaUAUUuuUGCG-UCCCCAaaUCGUCG- -5' |
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1539 | 3' | -44.9 | NC_001347.2 | + | 44394 | 0.76 | 0.977051 |
Target: 5'- ---gGAGAACGCcGGGGc--AGCAGCg -3' miRNA: 3'- uauaUUUUUGCGuCCCCaaaUCGUCG- -5' |
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1539 | 3' | -44.9 | NC_001347.2 | + | 74516 | 0.66 | 0.999999 |
Target: 5'- -----uGAGCGCgcgacagauauaGGGGGUgaUAGCGGUg -3' miRNA: 3'- uauauuUUUGCG------------UCCCCAa-AUCGUCG- -5' |
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1539 | 3' | -44.9 | NC_001347.2 | + | 82709 | 0.68 | 0.999978 |
Target: 5'- gGUGUAcGggUGguGGcGGUgguGCAGCg -3' miRNA: 3'- -UAUAUuUuuGCguCC-CCAaauCGUCG- -5' |
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1539 | 3' | -44.9 | NC_001347.2 | + | 85497 | 0.67 | 0.999996 |
Target: 5'- -------cGCGCAGcGGUUcgGGCGGCu -3' miRNA: 3'- uauauuuuUGCGUCcCCAAa-UCGUCG- -5' |
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1539 | 3' | -44.9 | NC_001347.2 | + | 113113 | 0.67 | 0.999998 |
Target: 5'- --cUGGAAGCGCAGGcGGcUguacaggagaUGGCGGUu -3' miRNA: 3'- uauAUUUUUGCGUCC-CCaA----------AUCGUCG- -5' |
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1539 | 3' | -44.9 | NC_001347.2 | + | 117989 | 0.71 | 0.99965 |
Target: 5'- ---gAAGAACGCGgacgacacGGuGGUUgUAGCAGCg -3' miRNA: 3'- uauaUUUUUGCGU--------CC-CCAA-AUCGUCG- -5' |
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1539 | 3' | -44.9 | NC_001347.2 | + | 132830 | 0.68 | 0.999989 |
Target: 5'- gGUGUuuuuACGCAGguGGGUgaGGCAGUu -3' miRNA: 3'- -UAUAuuuuUGCGUC--CCCAaaUCGUCG- -5' |
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1539 | 3' | -44.9 | NC_001347.2 | + | 133583 | 0.66 | 0.999999 |
Target: 5'- -aGUGAAAACGUGGGGGgacAG-AGUu -3' miRNA: 3'- uaUAUUUUUGCGUCCCCaaaUCgUCG- -5' |
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1539 | 3' | -44.9 | NC_001347.2 | + | 135306 | 0.67 | 0.999994 |
Target: 5'- ---gGGGAGCaGCGGGGGag-GGgAGCg -3' miRNA: 3'- uauaUUUUUG-CGUCCCCaaaUCgUCG- -5' |
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1539 | 3' | -44.9 | NC_001347.2 | + | 137370 | 0.67 | 0.999994 |
Target: 5'- -gAUAAGGugGCguaccuAGGGGUgUGGCuGUa -3' miRNA: 3'- uaUAUUUUugCG------UCCCCAaAUCGuCG- -5' |
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1539 | 3' | -44.9 | NC_001347.2 | + | 140528 | 0.72 | 0.998924 |
Target: 5'- ------cGACGCcaaggacGGGGGUUUGGaCGGCa -3' miRNA: 3'- uauauuuUUGCG-------UCCCCAAAUC-GUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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