miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1540 3' -60.2 NC_001347.2 + 185342 0.68 0.722188
Target:  5'- aGGuCCGUgcgagcagGCCGCCGCCGUggggGCCGc -3'
miRNA:   3'- -CC-GGUAa-------CGGCGGCGGCGgguaUGGU- -5'
1540 3' -60.2 NC_001347.2 + 178768 0.68 0.722188
Target:  5'- cGCCGa-GCCuGCCGuuGCCCGUGUCGg -3'
miRNA:   3'- cCGGUaaCGG-CGGCggCGGGUAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 116665 0.68 0.71275
Target:  5'- aGCaCGgcGCCGCCGCCGUC---GCCAc -3'
miRNA:   3'- cCG-GUaaCGGCGGCGGCGGguaUGGU- -5'
1540 3' -60.2 NC_001347.2 + 197102 0.68 0.71275
Target:  5'- cGCCAaccGCUGCCGCCGCaag-GCCc -3'
miRNA:   3'- cCGGUaa-CGGCGGCGGCGgguaUGGu -5'
1540 3' -60.2 NC_001347.2 + 112513 0.68 0.71275
Target:  5'- cGGCguUUGuuguguCCGCCGCUGCCCccgugacgGUGCUg -3'
miRNA:   3'- -CCGguAAC------GGCGGCGGCGGG--------UAUGGu -5'
1540 3' -60.2 NC_001347.2 + 126071 0.68 0.703249
Target:  5'- cGCUAccugGCCGCgCGCCaGCCCAUcCCc -3'
miRNA:   3'- cCGGUaa--CGGCG-GCGG-CGGGUAuGGu -5'
1540 3' -60.2 NC_001347.2 + 191153 0.68 0.703249
Target:  5'- cGCCA-UGCCGCgugaCGCUGaCCCGU-CCAa -3'
miRNA:   3'- cCGGUaACGGCG----GCGGC-GGGUAuGGU- -5'
1540 3' -60.2 NC_001347.2 + 184252 0.68 0.702296
Target:  5'- cGCCGUUGCCGUCGUCGUUgGagacggaggguucUGCCc -3'
miRNA:   3'- cCGGUAACGGCGGCGGCGGgU-------------AUGGu -5'
1540 3' -60.2 NC_001347.2 + 174603 0.68 0.693694
Target:  5'- aGCCAUcgGCCGCCcaccGCUaCCCGUACUc -3'
miRNA:   3'- cCGGUAa-CGGCGG----CGGcGGGUAUGGu -5'
1540 3' -60.2 NC_001347.2 + 135541 0.68 0.693694
Target:  5'- gGGaCCgAUUGCCGUcgagccggggCGUCGCCCGUccccACCAc -3'
miRNA:   3'- -CC-GG-UAACGGCG----------GCGGCGGGUA----UGGU- -5'
1540 3' -60.2 NC_001347.2 + 193137 0.68 0.693694
Target:  5'- cGUCGUcGCCGCCGUCGCgCCuu-CCu -3'
miRNA:   3'- cCGGUAaCGGCGGCGGCG-GGuauGGu -5'
1540 3' -60.2 NC_001347.2 + 110458 0.68 0.693694
Target:  5'- uGGCCuUUG-CGCUGCCGCUggaccgCGUGCCc -3'
miRNA:   3'- -CCGGuAACgGCGGCGGCGG------GUAUGGu -5'
1540 3' -60.2 NC_001347.2 + 103232 0.68 0.692737
Target:  5'- cGCCAUggaUGCCgacgaGCCGCUGUuuguggacgauuaCCGUGCCAc -3'
miRNA:   3'- cCGGUA---ACGG-----CGGCGGCG-------------GGUAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 208213 0.68 0.690819
Target:  5'- cGCCGcUGCUcuuccucagagacgGCCGCCGCCgcUACCGc -3'
miRNA:   3'- cCGGUaACGG--------------CGGCGGCGGguAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 128004 0.68 0.684094
Target:  5'- cGCCGUcUGuuGCCGCUGUucaUCGUGCCc -3'
miRNA:   3'- cCGGUA-ACggCGGCGGCG---GGUAUGGu -5'
1540 3' -60.2 NC_001347.2 + 63921 0.68 0.684094
Target:  5'- -aCCAccGCUGCCGCCGCCaCGacaaacacUACCGu -3'
miRNA:   3'- ccGGUaaCGGCGGCGGCGG-GU--------AUGGU- -5'
1540 3' -60.2 NC_001347.2 + 110143 0.68 0.683131
Target:  5'- aGGCCGaaGCCGCCagcggaagcuuugGUCGCCUGcacUGCCAg -3'
miRNA:   3'- -CCGGUaaCGGCGG-------------CGGCGGGU---AUGGU- -5'
1540 3' -60.2 NC_001347.2 + 39692 0.69 0.674454
Target:  5'- cGGCgCG-UGCUGgCGCCGCCUuggcGCCAc -3'
miRNA:   3'- -CCG-GUaACGGCgGCGGCGGGua--UGGU- -5'
1540 3' -60.2 NC_001347.2 + 168538 0.69 0.674454
Target:  5'- cGGCguaCAgcggGUCGCgCGCCGUCUGUACCGu -3'
miRNA:   3'- -CCG---GUaa--CGGCG-GCGGCGGGUAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 180221 0.69 0.674454
Target:  5'- aGGCCG-UGCCGCCG-CGCCguaGUucuCCGa -3'
miRNA:   3'- -CCGGUaACGGCGGCgGCGGg--UAu--GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.