miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1540 3' -60.2 NC_001347.2 + 39202 0.7 0.615243
Target:  5'- uGGCCAaaaacGCCGCgCGCCacacggcGCCCAUgGCCu -3'
miRNA:   3'- -CCGGUaa---CGGCG-GCGG-------CGGGUA-UGGu -5'
1540 3' -60.2 NC_001347.2 + 39319 0.7 0.616214
Target:  5'- uGCUAUUGuuGCCGCuacucggaggggCGCCCGgcgGCCc -3'
miRNA:   3'- cCGGUAACggCGGCG------------GCGGGUa--UGGu -5'
1540 3' -60.2 NC_001347.2 + 39692 0.69 0.674454
Target:  5'- cGGCgCG-UGCUGgCGCCGCCUuggcGCCAc -3'
miRNA:   3'- -CCG-GUaACGGCgGCGGCGGGua--UGGU- -5'
1540 3' -60.2 NC_001347.2 + 41406 0.73 0.439868
Target:  5'- aGGCCAcgGCCGCCGUguacaguuagaaCGUCCAU-CCGc -3'
miRNA:   3'- -CCGGUaaCGGCGGCG------------GCGGGUAuGGU- -5'
1540 3' -60.2 NC_001347.2 + 43978 0.66 0.819674
Target:  5'- aGCCGaccgGCCGCCGaCCcguucCCCAggACCAg -3'
miRNA:   3'- cCGGUaa--CGGCGGC-GGc----GGGUa-UGGU- -5'
1540 3' -60.2 NC_001347.2 + 54898 0.66 0.835686
Target:  5'- uGGCCAUUGCauaCGuuGUauCCAUAUCAu -3'
miRNA:   3'- -CCGGUAACGgcgGCggCG--GGUAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 56439 0.68 0.731557
Target:  5'- -cUCGUUGCUGCCGCgCGCgCC--ACCAg -3'
miRNA:   3'- ccGGUAACGGCGGCG-GCG-GGuaUGGU- -5'
1540 3' -60.2 NC_001347.2 + 62779 0.78 0.230695
Target:  5'- cGCCGUUGCgGCCGCCGCUCAcaguCUAu -3'
miRNA:   3'- cCGGUAACGgCGGCGGCGGGUau--GGU- -5'
1540 3' -60.2 NC_001347.2 + 63111 0.74 0.359153
Target:  5'- uGGCCGccgcgGCCGCCGCUguggccggaguGCCCGUcGCCGc -3'
miRNA:   3'- -CCGGUaa---CGGCGGCGG-----------CGGGUA-UGGU- -5'
1540 3' -60.2 NC_001347.2 + 63175 0.66 0.794519
Target:  5'- cGCCAcgGUCaccaCGCCGCCCAugaucgaccuUACCAg -3'
miRNA:   3'- cCGGUaaCGGcg--GCGGCGGGU----------AUGGU- -5'
1540 3' -60.2 NC_001347.2 + 63243 0.71 0.529955
Target:  5'- cGGCCuccgcgGCCGCUG-CGCCCGccgugGCCAc -3'
miRNA:   3'- -CCGGuaa---CGGCGGCgGCGGGUa----UGGU- -5'
1540 3' -60.2 NC_001347.2 + 63921 0.68 0.684094
Target:  5'- -aCCAccGCUGCCGCCGCCaCGacaaacacUACCGu -3'
miRNA:   3'- ccGGUaaCGGCGGCGGCGG-GU--------AUGGU- -5'
1540 3' -60.2 NC_001347.2 + 64750 0.66 0.82776
Target:  5'- uGCCGcagacUUGaugUGCCGCCGCCCGgaUugCGg -3'
miRNA:   3'- cCGGU-----AACg--GCGGCGGCGGGU--AugGU- -5'
1540 3' -60.2 NC_001347.2 + 65889 0.75 0.329896
Target:  5'- gGGCCGa--CCGCCGCCGCCCu--CCc -3'
miRNA:   3'- -CCGGUaacGGCGGCGGCGGGuauGGu -5'
1540 3' -60.2 NC_001347.2 + 67294 0.69 0.625933
Target:  5'- cGGUgG-UGCCuCCGCCGCCUcaGCCGg -3'
miRNA:   3'- -CCGgUaACGGcGGCGGCGGGuaUGGU- -5'
1540 3' -60.2 NC_001347.2 + 67360 0.71 0.520607
Target:  5'- cGCCGccGUCGCCGCCGCCUcggACUc -3'
miRNA:   3'- cCGGUaaCGGCGGCGGCGGGua-UGGu -5'
1540 3' -60.2 NC_001347.2 + 67655 0.77 0.270628
Target:  5'- cGGCCGcUGCCGCCGCCaccaCCAccGCCAg -3'
miRNA:   3'- -CCGGUaACGGCGGCGGcg--GGUa-UGGU- -5'
1540 3' -60.2 NC_001347.2 + 67710 0.76 0.302434
Target:  5'- cGUUcUUGCCGCCGCCGCCaugGCCu -3'
miRNA:   3'- cCGGuAACGGCGGCGGCGGguaUGGu -5'
1540 3' -60.2 NC_001347.2 + 68043 0.72 0.457217
Target:  5'- cGCCGcucCCGCCGCCGCCaccGCCAc -3'
miRNA:   3'- cCGGUaacGGCGGCGGCGGguaUGGU- -5'
1540 3' -60.2 NC_001347.2 + 68071 0.67 0.759165
Target:  5'- -aCCAgcGCCGCCGCC-UCCAccACCAc -3'
miRNA:   3'- ccGGUaaCGGCGGCGGcGGGUa-UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.