miRNA display CGI


Results 1 - 20 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1540 3' -60.2 NC_001347.2 + 453 0.67 0.768175
Target:  5'- cGCUuuuAUUcGCCGUCGCCGUCCuccgcACCAc -3'
miRNA:   3'- cCGG---UAA-CGGCGGCGGCGGGua---UGGU- -5'
1540 3' -60.2 NC_001347.2 + 734 0.72 0.492971
Target:  5'- cGCCG-UGCaCGUCGCUGCCUAUaaaaGCCAg -3'
miRNA:   3'- cCGGUaACG-GCGGCGGCGGGUA----UGGU- -5'
1540 3' -60.2 NC_001347.2 + 1271 0.7 0.596815
Target:  5'- gGGCac--GCUGCUGCCGCUCGgacgGCCGu -3'
miRNA:   3'- -CCGguaaCGGCGGCGGCGGGUa---UGGU- -5'
1540 3' -60.2 NC_001347.2 + 2406 0.72 0.492971
Target:  5'- aGGCCGcgcgGCgGCUGCUGCCCGaGCUg -3'
miRNA:   3'- -CCGGUaa--CGgCGGCGGCGGGUaUGGu -5'
1540 3' -60.2 NC_001347.2 + 5877 0.66 0.803046
Target:  5'- cGCCAgucGCCGCaGUCGCaCCAcagGCCGu -3'
miRNA:   3'- cCGGUaa-CGGCGgCGGCG-GGUa--UGGU- -5'
1540 3' -60.2 NC_001347.2 + 11778 0.69 0.655088
Target:  5'- uGCCAagUGCCGCuccaCGCCGCggcaCCAUgcGCCAg -3'
miRNA:   3'- cCGGUa-ACGGCG----GCGGCG----GGUA--UGGU- -5'
1540 3' -60.2 NC_001347.2 + 12332 0.66 0.833325
Target:  5'- aGGCCAUcuacggcgagcaaaUGCgcaCGCCGCUGCUa--ACCAc -3'
miRNA:   3'- -CCGGUA--------------ACG---GCGGCGGCGGguaUGGU- -5'
1540 3' -60.2 NC_001347.2 + 13531 0.71 0.520607
Target:  5'- cGGCCcggGCCGCCgugcuggaggGCCGCCCcacGCCc -3'
miRNA:   3'- -CCGGuaaCGGCGG----------CGGCGGGua-UGGu -5'
1540 3' -60.2 NC_001347.2 + 16517 0.66 0.794519
Target:  5'- uGGCCcuucgagGUagCGCCaGCCGCCCGcuugGCCGa -3'
miRNA:   3'- -CCGGuaa----CG--GCGG-CGGCGGGUa---UGGU- -5'
1540 3' -60.2 NC_001347.2 + 17123 0.86 0.072928
Target:  5'- cGGUCGUccGCCgucgGCCGCCGCCCAUGCCAc -3'
miRNA:   3'- -CCGGUAa-CGG----CGGCGGCGGGUAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 17331 0.67 0.768175
Target:  5'- cGCgGUUGCCGCgcguaugGCCGCCg--GCCAc -3'
miRNA:   3'- cCGgUAACGGCGg------CGGCGGguaUGGU- -5'
1540 3' -60.2 NC_001347.2 + 18460 0.66 0.811433
Target:  5'- gGGCC--UGCgCGCCuGCCGgCCuuuugACCAc -3'
miRNA:   3'- -CCGGuaACG-GCGG-CGGCgGGua---UGGU- -5'
1540 3' -60.2 NC_001347.2 + 20442 0.66 0.835686
Target:  5'- cGGCUuugUGCCGagaCCGUCGCCacCAUGCa- -3'
miRNA:   3'- -CCGGua-ACGGC---GGCGGCGG--GUAUGgu -5'
1540 3' -60.2 NC_001347.2 + 21624 0.67 0.759165
Target:  5'- uGCCA--GCCGUCGCCGCag--GCCu -3'
miRNA:   3'- cCGGUaaCGGCGGCGGCGgguaUGGu -5'
1540 3' -60.2 NC_001347.2 + 24602 0.69 0.645377
Target:  5'- cGGCacccgcGCUGCCGUCGUCCGUuCCGa -3'
miRNA:   3'- -CCGguaa--CGGCGGCGGCGGGUAuGGU- -5'
1540 3' -60.2 NC_001347.2 + 27997 0.69 0.664783
Target:  5'- -aCCcgUGUCGCCGCCGUcaCCAccGCCGa -3'
miRNA:   3'- ccGGuaACGGCGGCGGCG--GGUa-UGGU- -5'
1540 3' -60.2 NC_001347.2 + 31116 0.7 0.606506
Target:  5'- -uCCAUUGCCgGCCGgCGUCCAggcUGCCc -3'
miRNA:   3'- ccGGUAACGG-CGGCgGCGGGU---AUGGu -5'
1540 3' -60.2 NC_001347.2 + 38244 0.73 0.414565
Target:  5'- cGCCGcugcUGCUGCCGCgucCGCCCcgACCAc -3'
miRNA:   3'- cCGGUa---ACGGCGGCG---GCGGGuaUGGU- -5'
1540 3' -60.2 NC_001347.2 + 38399 0.66 0.82776
Target:  5'- cGGCCuccgucuccgUGCCGCuCGCCGCUgGcgGCg- -3'
miRNA:   3'- -CCGGua--------ACGGCG-GCGGCGGgUa-UGgu -5'
1540 3' -60.2 NC_001347.2 + 38460 0.69 0.645377
Target:  5'- cGCCGgccCCGCCGCgcaGCCCA-GCCAc -3'
miRNA:   3'- cCGGUaacGGCGGCGg--CGGGUaUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.