miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1540 3' -60.2 NC_001347.2 + 222759 1.1 0.001554
Target:  5'- cGGCCAUUGCCGCCGCCGCCCAUACCAu -3'
miRNA:   3'- -CCGGUAACGGCGGCGGCGGGUAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 17123 0.86 0.072928
Target:  5'- cGGUCGUccGCCgucgGCCGCCGCCCAUGCCAc -3'
miRNA:   3'- -CCGGUAa-CGG----CGGCGGCGGGUAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 166137 0.8 0.157872
Target:  5'- cGGCC---GCCGCCGCaaCGCCCGUGCCc -3'
miRNA:   3'- -CCGGuaaCGGCGGCG--GCGGGUAUGGu -5'
1540 3' -60.2 NC_001347.2 + 156653 0.8 0.173854
Target:  5'- gGGCCucgGCCGCCGCCGCCac--CCAu -3'
miRNA:   3'- -CCGGuaaCGGCGGCGGCGGguauGGU- -5'
1540 3' -60.2 NC_001347.2 + 131731 0.79 0.195849
Target:  5'- cGGCCGUcGCCGCCGCCGCgguUGCUAc -3'
miRNA:   3'- -CCGGUAaCGGCGGCGGCGgguAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 164690 0.79 0.205308
Target:  5'- uGGCCGUUGCCGCguuagCGCCGCUUucgGUACCc -3'
miRNA:   3'- -CCGGUAACGGCG-----GCGGCGGG---UAUGGu -5'
1540 3' -60.2 NC_001347.2 + 62779 0.78 0.230695
Target:  5'- cGCCGUUGCgGCCGCCGCUCAcaguCUAu -3'
miRNA:   3'- cCGGUAACGgCGGCGGCGGGUau--GGU- -5'
1540 3' -60.2 NC_001347.2 + 67655 0.77 0.270628
Target:  5'- cGGCCGcUGCCGCCGCCaccaCCAccGCCAg -3'
miRNA:   3'- -CCGGUaACGGCGGCGGcg--GGUa-UGGU- -5'
1540 3' -60.2 NC_001347.2 + 78414 0.76 0.29585
Target:  5'- gGGCUGcUGCCGCCGCCaCCCGgcCCGg -3'
miRNA:   3'- -CCGGUaACGGCGGCGGcGGGUauGGU- -5'
1540 3' -60.2 NC_001347.2 + 67710 0.76 0.302434
Target:  5'- cGUUcUUGCCGCCGCCGCCaugGCCu -3'
miRNA:   3'- cCGGuAACGGCGGCGGCGGguaUGGu -5'
1540 3' -60.2 NC_001347.2 + 196140 0.75 0.329896
Target:  5'- cGGCCGcUGCCuGCCgGCgGCCCuGUGCCGc -3'
miRNA:   3'- -CCGGUaACGG-CGG-CGgCGGG-UAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 65889 0.75 0.329896
Target:  5'- gGGCCGa--CCGCCGCCGCCCu--CCc -3'
miRNA:   3'- -CCGGUaacGGCGGCGGCGGGuauGGu -5'
1540 3' -60.2 NC_001347.2 + 114413 0.75 0.337042
Target:  5'- cGGCCGUguucgaUGaaaCGCgCGCCGCCCGUcucaGCCAg -3'
miRNA:   3'- -CCGGUA------ACg--GCG-GCGGCGGGUA----UGGU- -5'
1540 3' -60.2 NC_001347.2 + 63111 0.74 0.359153
Target:  5'- uGGCCGccgcgGCCGCCGCUguggccggaguGCCCGUcGCCGc -3'
miRNA:   3'- -CCGGUaa---CGGCGGCGG-----------CGGGUA-UGGU- -5'
1540 3' -60.2 NC_001347.2 + 89698 0.74 0.374447
Target:  5'- cGCCGgccCCGCCGCCGCCaccacUACCAc -3'
miRNA:   3'- cCGGUaacGGCGGCGGCGGgu---AUGGU- -5'
1540 3' -60.2 NC_001347.2 + 105550 0.74 0.374447
Target:  5'- cGCUAUgcgUGCUGCCGCCGCUCuu-CCAc -3'
miRNA:   3'- cCGGUA---ACGGCGGCGGCGGGuauGGU- -5'
1540 3' -60.2 NC_001347.2 + 81634 0.74 0.390176
Target:  5'- cGCaCGgcGCCGCCGCCGgCCUcgGUACCGa -3'
miRNA:   3'- cCG-GUaaCGGCGGCGGC-GGG--UAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 209165 0.74 0.398201
Target:  5'- cGGCgGcaGCCGaCCaCCGCCCAUACCu -3'
miRNA:   3'- -CCGgUaaCGGC-GGcGGCGGGUAUGGu -5'
1540 3' -60.2 NC_001347.2 + 38244 0.73 0.414565
Target:  5'- cGCCGcugcUGCUGCCGCgucCGCCCcgACCAc -3'
miRNA:   3'- cCGGUa---ACGGCGGCG---GCGGGuaUGGU- -5'
1540 3' -60.2 NC_001347.2 + 41406 0.73 0.439868
Target:  5'- aGGCCAcgGCCGCCGUguacaguuagaaCGUCCAU-CCGc -3'
miRNA:   3'- -CCGGUaaCGGCGGCG------------GCGGGUAuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.