miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1540 5' -51.3 NC_001347.2 + 190772 0.68 0.990518
Target:  5'- -gUGACGGGUUGCGGCUGaa-UCGCa -3'
miRNA:   3'- cgGCUGUUUAGCGUCGACagaAGCGg -5'
1540 5' -51.3 NC_001347.2 + 734 0.68 0.990144
Target:  5'- cGCCGuGCAcGUCGCugccuauaaaagccAGCUG-CgugUCGCCc -3'
miRNA:   3'- -CGGC-UGUuUAGCG--------------UCGACaGa--AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 178742 0.68 0.987798
Target:  5'- cCCGGCGcaacgGguGCUGUCcgCGCCg -3'
miRNA:   3'- cGGCUGUuuag-CguCGACAGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 113192 0.68 0.987798
Target:  5'- cGCCGGCGuggcggccuGAcUGCGGCUGUCgcccgaaCGCUc -3'
miRNA:   3'- -CGGCUGU---------UUaGCGUCGACAGaa-----GCGG- -5'
1540 5' -51.3 NC_001347.2 + 4610 0.68 0.987798
Target:  5'- uGCCGACAGGUaagaUGCGGCUaGUauuaaggcCUgaaCGCCa -3'
miRNA:   3'- -CGGCUGUUUA----GCGUCGA-CA--------GAa--GCGG- -5'
1540 5' -51.3 NC_001347.2 + 85297 0.69 0.986874
Target:  5'- cGgCGGCGAAUCGCccgGGCUGccccgcagguggugaUCagCGCCg -3'
miRNA:   3'- -CgGCUGUUUAGCG---UCGAC---------------AGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 163286 0.69 0.985216
Target:  5'- aCUGACGgcgucaaaaaacgucGGUCGCGGCgacucGUCgcgCGCCa -3'
miRNA:   3'- cGGCUGU---------------UUAGCGUCGa----CAGaa-GCGG- -5'
1540 5' -51.3 NC_001347.2 + 76830 0.69 0.984509
Target:  5'- uGCUGACGAAgccgaagCGCGGUagaugGUCUUgaccugCGCCg -3'
miRNA:   3'- -CGGCUGUUUa------GCGUCGa----CAGAA------GCGG- -5'
1540 5' -51.3 NC_001347.2 + 137635 0.69 0.983963
Target:  5'- uGCCGACAccaGAUggCGCucguugaccaggaaAGCUGUCUaCGCg -3'
miRNA:   3'- -CGGCUGU---UUA--GCG--------------UCGACAGAaGCGg -5'
1540 5' -51.3 NC_001347.2 + 117438 0.69 0.982036
Target:  5'- uCCGGCGGAUCGCGGCccucccaaagcgcaUGUCcguaggCgGCCa -3'
miRNA:   3'- cGGCUGUUUAGCGUCG--------------ACAGaa----G-CGG- -5'
1540 5' -51.3 NC_001347.2 + 125727 0.69 0.980587
Target:  5'- cGCCuGCAGcucgCGCAGCUcccGUCcUCGCUa -3'
miRNA:   3'- -CGGcUGUUua--GCGUCGA---CAGaAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 38681 0.69 0.979721
Target:  5'- uGCCGGCccaccgccggCGCAGCUcccGUCcgagCGCCg -3'
miRNA:   3'- -CGGCUGuuua------GCGUCGA---CAGaa--GCGG- -5'
1540 5' -51.3 NC_001347.2 + 1595 0.69 0.978369
Target:  5'- cGCgGGCGAGguggUGCGGCUGUac-CGCUg -3'
miRNA:   3'- -CGgCUGUUUa---GCGUCGACAgaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 175006 0.69 0.978369
Target:  5'- uGCCgGugGAGUCGCAGCag----CGCCu -3'
miRNA:   3'- -CGG-CugUUUAGCGUCGacagaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 87475 0.69 0.975968
Target:  5'- uGCaaaaGGCAcGUCgGUAGCUGUCgaugcaCGCCa -3'
miRNA:   3'- -CGg---CUGUuUAG-CGUCGACAGaa----GCGG- -5'
1540 5' -51.3 NC_001347.2 + 184215 0.69 0.975968
Target:  5'- uGCCG-CAGggcgGUCGCuAGCgUGUCgcagcgUUCGCCg -3'
miRNA:   3'- -CGGCuGUU----UAGCG-UCG-ACAG------AAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 153011 0.69 0.975968
Target:  5'- gGUgGGCAGGaUGCGGUUGUCcUCGCa -3'
miRNA:   3'- -CGgCUGUUUaGCGUCGACAGaAGCGg -5'
1540 5' -51.3 NC_001347.2 + 88251 0.7 0.970591
Target:  5'- cGCCGGUGAAgagagCGCGGCguacgcugGUCacgUCGCCg -3'
miRNA:   3'- -CGGCUGUUUa----GCGUCGa-------CAGa--AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 94810 0.7 0.967602
Target:  5'- cGCCGGCGugcGUCaugagGUAGCUGUacaCGCCg -3'
miRNA:   3'- -CGGCUGUu--UAG-----CGUCGACAgaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 24931 0.7 0.967602
Target:  5'- cGCCGGuCAcuuuUCGCAGCgGUCcuuUUCGUCc -3'
miRNA:   3'- -CGGCU-GUuu--AGCGUCGaCAG---AAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.