miRNA display CGI


Results 21 - 40 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1540 5' -51.3 NC_001347.2 + 75975 0.68 0.992738
Target:  5'- -gCGGCGAGUCGCccAGCggGUCg--GCCa -3'
miRNA:   3'- cgGCUGUUUAGCG--UCGa-CAGaagCGG- -5'
1540 5' -51.3 NC_001347.2 + 76830 0.69 0.984509
Target:  5'- uGCUGACGAAgccgaagCGCGGUagaugGUCUUgaccugCGCCg -3'
miRNA:   3'- -CGGCUGUUUa------GCGUCGa----CAGAA------GCGG- -5'
1540 5' -51.3 NC_001347.2 + 83169 0.66 0.998506
Target:  5'- cGCCGuguuCA---UGCAGCUcGUCUUUuuaGCCg -3'
miRNA:   3'- -CGGCu---GUuuaGCGUCGA-CAGAAG---CGG- -5'
1540 5' -51.3 NC_001347.2 + 85250 0.67 0.9952
Target:  5'- aGCCGGCcca--GCAGCucgggcgUGUUUUCGUCc -3'
miRNA:   3'- -CGGCUGuuuagCGUCG-------ACAGAAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 85297 0.69 0.986874
Target:  5'- cGgCGGCGAAUCGCccgGGCUGccccgcagguggugaUCagCGCCg -3'
miRNA:   3'- -CgGCUGUUUAGCG---UCGAC---------------AGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 87475 0.69 0.975968
Target:  5'- uGCaaaaGGCAcGUCgGUAGCUGUCgaugcaCGCCa -3'
miRNA:   3'- -CGg---CUGUuUAG-CGUCGACAGaa----GCGG- -5'
1540 5' -51.3 NC_001347.2 + 88251 0.7 0.970591
Target:  5'- cGCCGGUGAAgagagCGCGGCguacgcugGUCacgUCGCCg -3'
miRNA:   3'- -CGGCUGUUUa----GCGUCGa-------CAGa--AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 88341 0.67 0.995935
Target:  5'- aGCCGugGuaaccGUCGCcGCUGgCggCGCUg -3'
miRNA:   3'- -CGGCugUu----UAGCGuCGACaGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 89026 0.71 0.953497
Target:  5'- -aCGuuacCGGAUUGCAGCUGUCgggCGCg -3'
miRNA:   3'- cgGCu---GUUUAGCGUCGACAGaa-GCGg -5'
1540 5' -51.3 NC_001347.2 + 91406 0.66 0.998506
Target:  5'- uGCUGGCcAAUCGCGuGCUGcaguaccucaUCcaCGCCu -3'
miRNA:   3'- -CGGCUGuUUAGCGU-CGAC----------AGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 94810 0.7 0.967602
Target:  5'- cGCCGGCGugcGUCaugagGUAGCUGUacaCGCCg -3'
miRNA:   3'- -CGGCUGUu--UAG-----CGUCGACAgaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 97650 0.71 0.957356
Target:  5'- cCCGGCAcGUCGUAcagcucgucccuGCUGUCgUCGUCu -3'
miRNA:   3'- cGGCUGUuUAGCGU------------CGACAGaAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 106014 0.77 0.696021
Target:  5'- -aCGACGAGaucgCGCGGCUGUCggCGCUu -3'
miRNA:   3'- cgGCUGUUUa---GCGUCGACAGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 113192 0.68 0.987798
Target:  5'- cGCCGGCGuggcggccuGAcUGCGGCUGUCgcccgaaCGCUc -3'
miRNA:   3'- -CGGCUGU---------UUaGCGUCGACAGaa-----GCGG- -5'
1540 5' -51.3 NC_001347.2 + 113377 0.73 0.908211
Target:  5'- uGCCcaACAGGcCGUAGCUGUCUgagcgaaagggaUCGCCc -3'
miRNA:   3'- -CGGc-UGUUUaGCGUCGACAGA------------AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 115029 0.68 0.990518
Target:  5'- uGCCGuCAccGUCGCGuccgacgcgacGgUGUUUUCGCCg -3'
miRNA:   3'- -CGGCuGUu-UAGCGU-----------CgACAGAAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 117438 0.69 0.982036
Target:  5'- uCCGGCGGAUCGCGGCccucccaaagcgcaUGUCcguaggCgGCCa -3'
miRNA:   3'- cGGCUGUUUAGCGUCG--------------ACAGaa----G-CGG- -5'
1540 5' -51.3 NC_001347.2 + 125727 0.69 0.980587
Target:  5'- cGCCuGCAGcucgCGCAGCUcccGUCcUCGCUa -3'
miRNA:   3'- -CGGcUGUUua--GCGUCGA---CAGaAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 126019 0.72 0.92545
Target:  5'- -gCGGCGGGUgGC-GCccGUCUUCGCCg -3'
miRNA:   3'- cgGCUGUUUAgCGuCGa-CAGAAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 126934 0.67 0.993681
Target:  5'- uUCGGCAccuccaCGCAGCUGgcg-CGCCa -3'
miRNA:   3'- cGGCUGUuua---GCGUCGACagaaGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.