miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1540 5' -51.3 NC_001347.2 + 734 0.68 0.990144
Target:  5'- cGCCGuGCAcGUCGCugccuauaaaagccAGCUG-CgugUCGCCc -3'
miRNA:   3'- -CGGC-UGUuUAGCG--------------UCGACaGa--AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 1595 0.69 0.978369
Target:  5'- cGCgGGCGAGguggUGCGGCUGUac-CGCUg -3'
miRNA:   3'- -CGgCUGUUUa---GCGUCGACAgaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 1678 0.66 0.998506
Target:  5'- uCCGACAGA-CGUuGCUGcg--CGCCg -3'
miRNA:   3'- cGGCUGUUUaGCGuCGACagaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 4610 0.68 0.987798
Target:  5'- uGCCGACAGGUaagaUGCGGCUaGUauuaaggcCUgaaCGCCa -3'
miRNA:   3'- -CGGCUGUUUA----GCGUCGA-CA--------GAa--GCGG- -5'
1540 5' -51.3 NC_001347.2 + 5687 0.73 0.901991
Target:  5'- cGCCGACGAcucGUCGuCGGau-UCUUUGCCg -3'
miRNA:   3'- -CGGCUGUU---UAGC-GUCgacAGAAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 12633 0.68 0.991687
Target:  5'- gGUgGGCGAAUCGCuacccuccGGC-GUCUUucaCGCCg -3'
miRNA:   3'- -CGgCUGUUUAGCG--------UCGaCAGAA---GCGG- -5'
1540 5' -51.3 NC_001347.2 + 16946 0.66 0.997874
Target:  5'- cGCUGGCucuGUCGaGGCgacGUUUUCGCg -3'
miRNA:   3'- -CGGCUGuu-UAGCgUCGa--CAGAAGCGg -5'
1540 5' -51.3 NC_001347.2 + 24931 0.7 0.967602
Target:  5'- cGCCGGuCAcuuuUCGCAGCgGUCcuuUUCGUCc -3'
miRNA:   3'- -CGGCU-GUuu--AGCGUCGaCAG---AAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 25379 0.68 0.993128
Target:  5'- cGCCGugGGuUgGCAGCUGgccggCUUgaccgcguuguugagCGCCu -3'
miRNA:   3'- -CGGCugUUuAgCGUCGACa----GAA---------------GCGG- -5'
1540 5' -51.3 NC_001347.2 + 25722 0.68 0.991687
Target:  5'- cGCCGuCAGAUCGUGGUcGUCcaUGCUu -3'
miRNA:   3'- -CGGCuGUUUAGCGUCGaCAGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 30742 0.66 0.998213
Target:  5'- -gCGACGAGUCGUcuGC-GUCcUCGUCg -3'
miRNA:   3'- cgGCUGUUUAGCGu-CGaCAGaAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 33416 0.67 0.993681
Target:  5'- uGCCGACccc-CGguGagcgGUCUUCGCg -3'
miRNA:   3'- -CGGCUGuuuaGCguCga--CAGAAGCGg -5'
1540 5' -51.3 NC_001347.2 + 38681 0.69 0.979721
Target:  5'- uGCCGGCccaccgccggCGCAGCUcccGUCcgagCGCCg -3'
miRNA:   3'- -CGGCUGuuua------GCGUCGA---CAGaa--GCGG- -5'
1540 5' -51.3 NC_001347.2 + 38754 0.66 0.997034
Target:  5'- cGCCGGCuGAggcaGCAGC-GUCgcgCGCg -3'
miRNA:   3'- -CGGCUGuUUag--CGUCGaCAGaa-GCGg -5'
1540 5' -51.3 NC_001347.2 + 40669 0.66 0.997483
Target:  5'- gGCCGGgGAcggggGUUGCgcuggggccggGGCUGUUcgCGCCg -3'
miRNA:   3'- -CGGCUgUU-----UAGCG-----------UCGACAGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 42898 0.67 0.993681
Target:  5'- cGgCGACGGAgaGgAGCUGUCcgcCGCCg -3'
miRNA:   3'- -CgGCUGUUUagCgUCGACAGaa-GCGG- -5'
1540 5' -51.3 NC_001347.2 + 54266 0.68 0.991687
Target:  5'- -aCGACAAggCGCAGUaccUG-CUgggCGCCg -3'
miRNA:   3'- cgGCUGUUuaGCGUCG---ACaGAa--GCGG- -5'
1540 5' -51.3 NC_001347.2 + 54486 0.66 0.998478
Target:  5'- cGCCGACuaaauucauGUCGCGcgauaguGgUGUUUaUCGCCg -3'
miRNA:   3'- -CGGCUGuu-------UAGCGU-------CgACAGA-AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 65630 0.71 0.949411
Target:  5'- cCCGACGAGcaggcUCGCGuGUuuUGUCUgagCGCCg -3'
miRNA:   3'- cGGCUGUUU-----AGCGU-CG--ACAGAa--GCGG- -5'
1540 5' -51.3 NC_001347.2 + 66517 0.67 0.99652
Target:  5'- aGgCGGCGgcGAUCGCAGCc-UCcUCGCUg -3'
miRNA:   3'- -CgGCUGU--UUAGCGUCGacAGaAGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.