miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1540 5' -51.3 NC_001347.2 + 222796 1.15 0.005214
Target:  5'- gGCCGACAAAUCGCAGCUGUCUUCGCCg -3'
miRNA:   3'- -CGGCUGUUUAGCGUCGACAGAAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 161880 0.78 0.664571
Target:  5'- cGCCGACAGGUacgGCAGUUGUugcguggCUUUGCCc -3'
miRNA:   3'- -CGGCUGUUUAg--CGUCGACA-------GAAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 106014 0.77 0.696021
Target:  5'- -aCGACGAGaucgCGCGGCUGUCggCGCUu -3'
miRNA:   3'- cgGCUGUUUa---GCGUCGACAGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 228687 0.76 0.755189
Target:  5'- aGUCGGCGucaaAGUCGCuugcGCUGUCggcccagUCGCCa -3'
miRNA:   3'- -CGGCUGU----UUAGCGu---CGACAGa------AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 208041 0.75 0.810447
Target:  5'- aCCGACGucggAGUCGCGGCguucGUUggCGCCg -3'
miRNA:   3'- cGGCUGU----UUAGCGUCGa---CAGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 5687 0.73 0.901991
Target:  5'- cGCCGACGAcucGUCGuCGGau-UCUUUGCCg -3'
miRNA:   3'- -CGGCUGUU---UAGC-GUCgacAGAAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 113377 0.73 0.908211
Target:  5'- uGCCcaACAGGcCGUAGCUGUCUgagcgaaagggaUCGCCc -3'
miRNA:   3'- -CGGc-UGUUUaGCGUCGACAGA------------AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 126019 0.72 0.92545
Target:  5'- -gCGGCGGGUgGC-GCccGUCUUCGCCg -3'
miRNA:   3'- cgGCUGUUUAgCGuCGa-CAGAAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 163369 0.71 0.940538
Target:  5'- cGuuGAUGAGUCGCAGacgcGUCUguUCGUCg -3'
miRNA:   3'- -CggCUGUUUAGCGUCga--CAGA--AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 197624 0.71 0.945092
Target:  5'- cGCCGACucgcugcCGCAGCUG-CUggagCGCg -3'
miRNA:   3'- -CGGCUGuuua---GCGUCGACaGAa---GCGg -5'
1540 5' -51.3 NC_001347.2 + 65630 0.71 0.949411
Target:  5'- cCCGACGAGcaggcUCGCGuGUuuUGUCUgagCGCCg -3'
miRNA:   3'- cGGCUGUUU-----AGCGU-CG--ACAGAa--GCGG- -5'
1540 5' -51.3 NC_001347.2 + 89026 0.71 0.953497
Target:  5'- -aCGuuacCGGAUUGCAGCUGUCgggCGCg -3'
miRNA:   3'- cgGCu---GUUUAGCGUCGACAGaa-GCGg -5'
1540 5' -51.3 NC_001347.2 + 225525 0.71 0.953497
Target:  5'- gGCgGGCGAAUCGgcCGGCUGg--UCGUCg -3'
miRNA:   3'- -CGgCUGUUUAGC--GUCGACagaAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 97650 0.71 0.957356
Target:  5'- cCCGGCAcGUCGUAcagcucgucccuGCUGUCgUCGUCu -3'
miRNA:   3'- cGGCUGUuUAGCGU------------CGACAGaAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 172542 0.71 0.957356
Target:  5'- cGCUGGCucggCGCGGCUGUauuauuagaCGCCg -3'
miRNA:   3'- -CGGCUGuuuaGCGUCGACAgaa------GCGG- -5'
1540 5' -51.3 NC_001347.2 + 195614 0.7 0.967602
Target:  5'- cGCCGAUucguAAUCGacaggaGGCUGUgcgCGCCg -3'
miRNA:   3'- -CGGCUGu---UUAGCg-----UCGACAgaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 94810 0.7 0.967602
Target:  5'- cGCCGGCGugcGUCaugagGUAGCUGUacaCGCCg -3'
miRNA:   3'- -CGGCUGUu--UAG-----CGUCGACAgaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 142616 0.7 0.967602
Target:  5'- uGCCGGCcAAaCGCAGCcgGUUguaacCGCCa -3'
miRNA:   3'- -CGGCUGuUUaGCGUCGa-CAGaa---GCGG- -5'
1540 5' -51.3 NC_001347.2 + 24931 0.7 0.967602
Target:  5'- cGCCGGuCAcuuuUCGCAGCgGUCcuuUUCGUCc -3'
miRNA:   3'- -CGGCU-GUuu--AGCGUCGaCAG---AAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 88251 0.7 0.970591
Target:  5'- cGCCGGUGAAgagagCGCGGCguacgcugGUCacgUCGCCg -3'
miRNA:   3'- -CGGCUGUUUa----GCGUCGa-------CAGa--AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.