miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1542 3' -52.1 NC_001347.2 + 98260 0.66 0.996438
Target:  5'- uCGCgCGUGUGCGgcgUAC-CGCuGAUACu -3'
miRNA:   3'- -GUG-GCGCACGUa--AUGuGCGcCUAUGu -5'
1542 3' -52.1 NC_001347.2 + 40390 0.66 0.995841
Target:  5'- aCACCGCcgGUGCGggGC-CGCGuGGUGg- -3'
miRNA:   3'- -GUGGCG--CACGUaaUGuGCGC-CUAUgu -5'
1542 3' -52.1 NC_001347.2 + 25353 0.66 0.995841
Target:  5'- uGCCGCGUgGCGcUGCAcaccuauggcgcCGUGGGUugGc -3'
miRNA:   3'- gUGGCGCA-CGUaAUGU------------GCGCCUAugU- -5'
1542 3' -52.1 NC_001347.2 + 206933 0.66 0.995841
Target:  5'- aGCaGCGUGaaCGUUGCACGUGGccuuUGCGg -3'
miRNA:   3'- gUGgCGCAC--GUAAUGUGCGCCu---AUGU- -5'
1542 3' -52.1 NC_001347.2 + 38556 0.66 0.995841
Target:  5'- gGCCGUcaGCAgcgACGCG-GGGUGCGg -3'
miRNA:   3'- gUGGCGcaCGUaa-UGUGCgCCUAUGU- -5'
1542 3' -52.1 NC_001347.2 + 1320 0.66 0.995446
Target:  5'- aCGCCGCGcagccagaugaacgGCGUggGCGCGaCGGAccUGCGu -3'
miRNA:   3'- -GUGGCGCa-------------CGUAa-UGUGC-GCCU--AUGU- -5'
1542 3' -52.1 NC_001347.2 + 193979 0.66 0.995165
Target:  5'- gCACCGUGUacGCGgcGCugGUGGG-GCAg -3'
miRNA:   3'- -GUGGCGCA--CGUaaUGugCGCCUaUGU- -5'
1542 3' -52.1 NC_001347.2 + 164723 0.66 0.995165
Target:  5'- cCGCCGCGUGCAacguccAgGCGCuGGuguugGCAg -3'
miRNA:   3'- -GUGGCGCACGUaa----UgUGCG-CCua---UGU- -5'
1542 3' -52.1 NC_001347.2 + 77769 0.66 0.995165
Target:  5'- gGCCgaGCGggcGCAauuugUACGCGCGGccGUGCAg -3'
miRNA:   3'- gUGG--CGCa--CGUa----AUGUGCGCC--UAUGU- -5'
1542 3' -52.1 NC_001347.2 + 74860 0.66 0.994402
Target:  5'- gGCCGCGcUGCAccACcucgGgGUGGAUGCGg -3'
miRNA:   3'- gUGGCGC-ACGUaaUG----UgCGCCUAUGU- -5'
1542 3' -52.1 NC_001347.2 + 150922 0.66 0.993545
Target:  5'- aGCgGCGUGCcgUGCGCGa--AUGCAu -3'
miRNA:   3'- gUGgCGCACGuaAUGUGCgccUAUGU- -5'
1542 3' -52.1 NC_001347.2 + 192650 0.66 0.992586
Target:  5'- aCGCUGCGUcGguUUcUGCGCGGcgACAg -3'
miRNA:   3'- -GUGGCGCA-CguAAuGUGCGCCuaUGU- -5'
1542 3' -52.1 NC_001347.2 + 205573 0.67 0.991517
Target:  5'- uUACCGUGUGUA--ACGCGCaGGUGu- -3'
miRNA:   3'- -GUGGCGCACGUaaUGUGCGcCUAUgu -5'
1542 3' -52.1 NC_001347.2 + 82820 0.67 0.989015
Target:  5'- aACCGCGU-CGUga-GCGCGGcgGCu -3'
miRNA:   3'- gUGGCGCAcGUAaugUGCGCCuaUGu -5'
1542 3' -52.1 NC_001347.2 + 155139 0.67 0.989015
Target:  5'- cCGCCGCGgcgGCcagcgcuucGUccauagguacUugACGCGGGUGCGc -3'
miRNA:   3'- -GUGGCGCa--CG---------UA----------AugUGCGCCUAUGU- -5'
1542 3' -52.1 NC_001347.2 + 104464 0.67 0.987565
Target:  5'- gGCCGCGUGCGaacuaauccUUACGC-CGGugACGa -3'
miRNA:   3'- gUGGCGCACGU---------AAUGUGcGCCuaUGU- -5'
1542 3' -52.1 NC_001347.2 + 65152 0.67 0.987565
Target:  5'- gCGCCGCGcUGgAUgacggugAUGCGCGGcUACAg -3'
miRNA:   3'- -GUGGCGC-ACgUAa------UGUGCGCCuAUGU- -5'
1542 3' -52.1 NC_001347.2 + 79294 0.67 0.987565
Target:  5'- aGCCGCaaGUGCucgacuUUACgguGCGCGGcgACAa -3'
miRNA:   3'- gUGGCG--CACGu-----AAUG---UGCGCCuaUGU- -5'
1542 3' -52.1 NC_001347.2 + 82517 0.67 0.985972
Target:  5'- gGCCaGCGcaGCGUaGCugGCGcGAUGCAc -3'
miRNA:   3'- gUGG-CGCa-CGUAaUGugCGC-CUAUGU- -5'
1542 3' -52.1 NC_001347.2 + 173979 0.67 0.985972
Target:  5'- gGCCGCGUGCcugggaACGCGCGcacgGCGc -3'
miRNA:   3'- gUGGCGCACGuaa---UGUGCGCcua-UGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.