miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1542 3' -52.1 NC_001347.2 + 228728 0.7 0.956742
Target:  5'- cCGCCGCG-GCGgauuucCGCGCGGGggACGg -3'
miRNA:   3'- -GUGGCGCaCGUaau---GUGCGCCUa-UGU- -5'
1542 3' -52.1 NC_001347.2 + 221857 1.09 0.010058
Target:  5'- aCACCGCGUGCAUUACACGCGGAUACAu -3'
miRNA:   3'- -GUGGCGCACGUAAUGUGCGCCUAUGU- -5'
1542 3' -52.1 NC_001347.2 + 206933 0.66 0.995841
Target:  5'- aGCaGCGUGaaCGUUGCACGUGGccuuUGCGg -3'
miRNA:   3'- gUGgCGCAC--GUAAUGUGCGCCu---AUGU- -5'
1542 3' -52.1 NC_001347.2 + 205573 0.67 0.991517
Target:  5'- uUACCGUGUGUA--ACGCGCaGGUGu- -3'
miRNA:   3'- -GUGGCGCACGUaaUGUGCGcCUAUgu -5'
1542 3' -52.1 NC_001347.2 + 203905 0.69 0.970126
Target:  5'- cCGCCGCGUGCGgauagGCACcUGGAcuuCAa -3'
miRNA:   3'- -GUGGCGCACGUaa---UGUGcGCCUau-GU- -5'
1542 3' -52.1 NC_001347.2 + 199232 0.75 0.762983
Target:  5'- uCACCGCGUGCGUgauuauccgACGCGUGaGAUcGCGc -3'
miRNA:   3'- -GUGGCGCACGUAa--------UGUGCGC-CUA-UGU- -5'
1542 3' -52.1 NC_001347.2 + 193979 0.66 0.995165
Target:  5'- gCACCGUGUacGCGgcGCugGUGGG-GCAg -3'
miRNA:   3'- -GUGGCGCA--CGUaaUGugCGCCUaUGU- -5'
1542 3' -52.1 NC_001347.2 + 193947 0.71 0.918988
Target:  5'- uCACCGCGUGCGgauuCucUGCGGcgACAc -3'
miRNA:   3'- -GUGGCGCACGUaau-Gu-GCGCCuaUGU- -5'
1542 3' -52.1 NC_001347.2 + 192650 0.66 0.992586
Target:  5'- aCGCUGCGUcGguUUcUGCGCGGcgACAg -3'
miRNA:   3'- -GUGGCGCA-CguAAuGUGCGCCuaUGU- -5'
1542 3' -52.1 NC_001347.2 + 173979 0.67 0.985972
Target:  5'- gGCCGCGUGCcugggaACGCGCGcacgGCGc -3'
miRNA:   3'- gUGGCGCACGuaa---UGUGCGCcua-UGU- -5'
1542 3' -52.1 NC_001347.2 + 172268 0.7 0.944355
Target:  5'- gCugCGCGUGCccguggugaAUUACGCGUGGuuggaGCAg -3'
miRNA:   3'- -GugGCGCACG---------UAAUGUGCGCCua---UGU- -5'
1542 3' -52.1 NC_001347.2 + 164723 0.66 0.995165
Target:  5'- cCGCCGCGUGCAacguccAgGCGCuGGuguugGCAg -3'
miRNA:   3'- -GUGGCGCACGUaa----UgUGCG-CCua---UGU- -5'
1542 3' -52.1 NC_001347.2 + 158013 0.71 0.934925
Target:  5'- aGCUGCGgcgGUAggACACGCGGGcGCc -3'
miRNA:   3'- gUGGCGCa--CGUaaUGUGCGCCUaUGu -5'
1542 3' -52.1 NC_001347.2 + 155139 0.67 0.989015
Target:  5'- cCGCCGCGgcgGCcagcgcuucGUccauagguacUugACGCGGGUGCGc -3'
miRNA:   3'- -GUGGCGCa--CG---------UA----------AugUGCGCCUAUGU- -5'
1542 3' -52.1 NC_001347.2 + 150922 0.66 0.993545
Target:  5'- aGCgGCGUGCcgUGCGCGa--AUGCAu -3'
miRNA:   3'- gUGgCGCACGuaAUGUGCgccUAUGU- -5'
1542 3' -52.1 NC_001347.2 + 150446 0.68 0.98025
Target:  5'- cCGCCGCuGUGCccgGCgACGCGGGUu-- -3'
miRNA:   3'- -GUGGCG-CACGuaaUG-UGCGCCUAugu -5'
1542 3' -52.1 NC_001347.2 + 142092 0.68 0.982323
Target:  5'- gCGCCGCGagaacgUGCuuUUugACGCGGAUc-- -3'
miRNA:   3'- -GUGGCGC------ACGu-AAugUGCGCCUAugu -5'
1542 3' -52.1 NC_001347.2 + 141322 0.69 0.960415
Target:  5'- cUACCGCGcggGCAaggGCaACGCGGGUAg- -3'
miRNA:   3'- -GUGGCGCa--CGUaa-UG-UGCGCCUAUgu -5'
1542 3' -52.1 NC_001347.2 + 137463 0.7 0.944355
Target:  5'- cCGCgCGCGUGCGUgcGCGCGCGuGAcguaACAa -3'
miRNA:   3'- -GUG-GCGCACGUAa-UGUGCGC-CUa---UGU- -5'
1542 3' -52.1 NC_001347.2 + 110478 0.67 0.985636
Target:  5'- gACCGCGUGCccguua-GCGGAcUGCAc -3'
miRNA:   3'- gUGGCGCACGuaaugugCGCCU-AUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.