miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1543 3' -56.4 NC_001347.2 + 214684 1.06 0.005594
Target:  5'- cAACGAGCACCAUCACGGCGGCGAACAg -3'
miRNA:   3'- -UUGCUCGUGGUAGUGCCGCCGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 129271 0.87 0.095989
Target:  5'- cGGCGAaccGCACCAUCACGGCGGCGAu-- -3'
miRNA:   3'- -UUGCU---CGUGGUAGUGCCGCCGCUugu -5'
1543 3' -56.4 NC_001347.2 + 156948 0.81 0.236055
Target:  5'- -uUGGGCACCGUCAucgUGGUGGCGAGCGc -3'
miRNA:   3'- uuGCUCGUGGUAGU---GCCGCCGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 173725 0.75 0.502979
Target:  5'- aAAUGAGCAgCgGUgGCGGCGGCGGugAu -3'
miRNA:   3'- -UUGCUCGU-GgUAgUGCCGCCGCUugU- -5'
1543 3' -56.4 NC_001347.2 + 226968 0.71 0.720169
Target:  5'- --aGAGacCACCuUCcCGGCGGCGGACAc -3'
miRNA:   3'- uugCUC--GUGGuAGuGCCGCCGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 38710 0.71 0.729848
Target:  5'- -cCGAGCGCCGUCGCcuccuCGGCGcGCAg -3'
miRNA:   3'- uuGCUCGUGGUAGUGcc---GCCGCuUGU- -5'
1543 3' -56.4 NC_001347.2 + 52865 0.71 0.729848
Target:  5'- aGACGucagaACCGUCGCGGCGGCaccAACAa -3'
miRNA:   3'- -UUGCucg--UGGUAGUGCCGCCGc--UUGU- -5'
1543 3' -56.4 NC_001347.2 + 108589 0.7 0.748951
Target:  5'- cAACGuGCACCAcuaccCGuCGGCGGcCGAGCGc -3'
miRNA:   3'- -UUGCuCGUGGUa----GU-GCCGCC-GCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 159250 0.7 0.75836
Target:  5'- uGCGuaAGCACCGUgAUaGGCGGCGAGg- -3'
miRNA:   3'- uUGC--UCGUGGUAgUG-CCGCCGCUUgu -5'
1543 3' -56.4 NC_001347.2 + 193974 0.7 0.767661
Target:  5'- cACGGGCACCGUguaCGCGGCgcuGGUgGGGCAg -3'
miRNA:   3'- uUGCUCGUGGUA---GUGCCG---CCG-CUUGU- -5'
1543 3' -56.4 NC_001347.2 + 106225 0.7 0.776846
Target:  5'- cACGAGCcagaCGagGCGGCGGCGGugGc -3'
miRNA:   3'- uUGCUCGug--GUagUGCCGCCGCUugU- -5'
1543 3' -56.4 NC_001347.2 + 75409 0.7 0.776846
Target:  5'- gAGCG-GCgGCCGUgGCGGCGGC-AGCGg -3'
miRNA:   3'- -UUGCuCG-UGGUAgUGCCGCCGcUUGU- -5'
1543 3' -56.4 NC_001347.2 + 136198 0.7 0.785907
Target:  5'- cGCGGacuGCGCCGg-GgGGCGGCGGGCAc -3'
miRNA:   3'- uUGCU---CGUGGUagUgCCGCCGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 140622 0.7 0.785907
Target:  5'- -cCGAGCgACgGUCugGGUGGCGGuCGu -3'
miRNA:   3'- uuGCUCG-UGgUAGugCCGCCGCUuGU- -5'
1543 3' -56.4 NC_001347.2 + 184737 0.7 0.794835
Target:  5'- gGACGuGGCACaguUCGCGGUGGCGcuCGu -3'
miRNA:   3'- -UUGC-UCGUGgu-AGUGCCGCCGCuuGU- -5'
1543 3' -56.4 NC_001347.2 + 59113 0.69 0.803623
Target:  5'- -cUGAGCugcgGCCAUCagagcaGCGGCggGGCGAGCAc -3'
miRNA:   3'- uuGCUCG----UGGUAG------UGCCG--CCGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 158164 0.69 0.812261
Target:  5'- uGCGAGCGCCAUCugGaCGcGCGcuCGc -3'
miRNA:   3'- uUGCUCGUGGUAGugCcGC-CGCuuGU- -5'
1543 3' -56.4 NC_001347.2 + 139325 0.69 0.812261
Target:  5'- uGGCG-GCGuuGUgCGCGGCGGUGGGCu -3'
miRNA:   3'- -UUGCuCGUggUA-GUGCCGCCGCUUGu -5'
1543 3' -56.4 NC_001347.2 + 60525 0.69 0.812261
Target:  5'- ---cAGCAUCGUCGCGGCGGCc---- -3'
miRNA:   3'- uugcUCGUGGUAGUGCCGCCGcuugu -5'
1543 3' -56.4 NC_001347.2 + 96975 0.68 0.856007
Target:  5'- cGGCGcAGCACCAcguugacaaggucguUCuccucgacgcGCGGCGGCGGAgGa -3'
miRNA:   3'- -UUGC-UCGUGGU---------------AG----------UGCCGCCGCUUgU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.