miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1543 3' -56.4 NC_001347.2 + 988 0.66 0.924779
Target:  5'- --gGAGCGCCGUCACaGCGG---GCAc -3'
miRNA:   3'- uugCUCGUGGUAGUGcCGCCgcuUGU- -5'
1543 3' -56.4 NC_001347.2 + 1724 0.66 0.939664
Target:  5'- --gGAGCugCG-C-CGGCGGUGGGCc -3'
miRNA:   3'- uugCUCGugGUaGuGCCGCCGCUUGu -5'
1543 3' -56.4 NC_001347.2 + 1925 0.67 0.913709
Target:  5'- cGCGGuGCuGCCcgCGCGGUGGCuGGGCu -3'
miRNA:   3'- uUGCU-CG-UGGuaGUGCCGCCG-CUUGu -5'
1543 3' -56.4 NC_001347.2 + 2305 0.68 0.88209
Target:  5'- gGACGGGCACguguaccCGCuGGCGGCGGAg- -3'
miRNA:   3'- -UUGCUCGUGgua----GUG-CCGCCGCUUgu -5'
1543 3' -56.4 NC_001347.2 + 8837 0.66 0.924779
Target:  5'- cGACGAaaccCACCGUCACGGUc-CGAGCAc -3'
miRNA:   3'- -UUGCUc---GUGGUAGUGCCGccGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 34333 0.66 0.924779
Target:  5'- cGAUGAGaa-CGUCAgCGGUGGCGAAa- -3'
miRNA:   3'- -UUGCUCgugGUAGU-GCCGCCGCUUgu -5'
1543 3' -56.4 NC_001347.2 + 37916 0.66 0.939664
Target:  5'- uGCGgcucGGCGCCcacagCGCGGCGcGCGggUg -3'
miRNA:   3'- uUGC----UCGUGGua---GUGCCGC-CGCuuGu -5'
1543 3' -56.4 NC_001347.2 + 37999 0.66 0.945476
Target:  5'- -uCGGGCAgCAgccgccgcgcggccuCGGCGGCGGGCGc -3'
miRNA:   3'- uuGCUCGUgGUagu------------GCCGCCGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 38160 0.66 0.944169
Target:  5'- cAGC-AGCACCAccagCAUGGCGcGCGGcACGg -3'
miRNA:   3'- -UUGcUCGUGGUa---GUGCCGC-CGCU-UGU- -5'
1543 3' -56.4 NC_001347.2 + 38710 0.71 0.729848
Target:  5'- -cCGAGCGCCGUCGCcuccuCGGCGcGCAg -3'
miRNA:   3'- uuGCUCGUGGUAGUGcc---GCCGCuUGU- -5'
1543 3' -56.4 NC_001347.2 + 52865 0.71 0.729848
Target:  5'- aGACGucagaACCGUCGCGGCGGCaccAACAa -3'
miRNA:   3'- -UUGCucg--UGGUAGUGCCGCCGc--UUGU- -5'
1543 3' -56.4 NC_001347.2 + 59113 0.69 0.803623
Target:  5'- -cUGAGCugcgGCCAUCagagcaGCGGCggGGCGAGCAc -3'
miRNA:   3'- uuGCUCG----UGGUAG------UGCCG--CCGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 60525 0.69 0.812261
Target:  5'- ---cAGCAUCGUCGCGGCGGCc---- -3'
miRNA:   3'- uugcUCGUGGUAGUGCCGCCGcuugu -5'
1543 3' -56.4 NC_001347.2 + 65714 0.68 0.88209
Target:  5'- cGCGA-CACgGUgGCGGCGGUGGAgGg -3'
miRNA:   3'- uUGCUcGUGgUAgUGCCGCCGCUUgU- -5'
1543 3' -56.4 NC_001347.2 + 66157 0.67 0.919359
Target:  5'- uGCGAGUACCugAUCgaccgACGGCGGCa---- -3'
miRNA:   3'- uUGCUCGUGG--UAG-----UGCCGCCGcuugu -5'
1543 3' -56.4 NC_001347.2 + 66503 0.66 0.939664
Target:  5'- aAACGccGCgAUCGagGCGGCGGCGAucGCAg -3'
miRNA:   3'- -UUGCu-CG-UGGUagUGCCGCCGCU--UGU- -5'
1543 3' -56.4 NC_001347.2 + 66575 0.67 0.913709
Target:  5'- gAACGAGgGCCcUCGcCGGCGGCcguugccGGCAa -3'
miRNA:   3'- -UUGCUCgUGGuAGU-GCCGCCGc------UUGU- -5'
1543 3' -56.4 NC_001347.2 + 68747 0.66 0.924779
Target:  5'- gAGCGAGUGCCGcCGCaGCcGGCaGAGCGc -3'
miRNA:   3'- -UUGCUCGUGGUaGUGcCG-CCG-CUUGU- -5'
1543 3' -56.4 NC_001347.2 + 75409 0.7 0.776846
Target:  5'- gAGCG-GCgGCCGUgGCGGCGGC-AGCGg -3'
miRNA:   3'- -UUGCuCG-UGGUAgUGCCGCCGcUUGU- -5'
1543 3' -56.4 NC_001347.2 + 79062 0.66 0.92997
Target:  5'- cGCGucGGCGCCAaaugagcCGCGaaGCGGCGGGCGg -3'
miRNA:   3'- uUGC--UCGUGGUa------GUGC--CGCCGCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.