miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15437 5' -52.7 NC_003930.1 + 8870 0.67 0.370679
Target:  5'- gGGACcuacucauUGCUGUCACCACcugUgGCUccGCc -3'
miRNA:   3'- -CCUG--------ACGGCAGUGGUGa--AgUGGuuCG- -5'
15437 5' -52.7 NC_003930.1 + 8795 0.67 0.341764
Target:  5'- aGGACUGCUG-CAUUACUgcugaACCAgagaaGGCc -3'
miRNA:   3'- -CCUGACGGCaGUGGUGAag---UGGU-----UCG- -5'
15437 5' -52.7 NC_003930.1 + 3275 0.67 0.332495
Target:  5'- uGGA-UGCCGUCGCUACUcUCGugUgGGGCu -3'
miRNA:   3'- -CCUgACGGCAGUGGUGA-AGU--GgUUCG- -5'
15437 5' -52.7 NC_003930.1 + 7930 0.67 0.332495
Target:  5'- aGGACaaguacaGCCGUaccgGCCGCg-CACUAAGCg -3'
miRNA:   3'- -CCUGa------CGGCAg---UGGUGaaGUGGUUCG- -5'
15437 5' -52.7 NC_003930.1 + 5365 0.68 0.323411
Target:  5'- cGGCUGCCGgccuaagcugccUCACgGCggccugCGCUggGCg -3'
miRNA:   3'- cCUGACGGC------------AGUGgUGaa----GUGGuuCG- -5'
15437 5' -52.7 NC_003930.1 + 6372 0.68 0.314514
Target:  5'- cGAUUGCUGUguugaCGCUcucgaACUUCACCAcGCa -3'
miRNA:   3'- cCUGACGGCA-----GUGG-----UGAAGUGGUuCG- -5'
15437 5' -52.7 NC_003930.1 + 9090 0.68 0.28894
Target:  5'- aGGACgugGUCGcUGCCACUgcUCACCAccucgucgauGGCu -3'
miRNA:   3'- -CCUGa--CGGCaGUGGUGA--AGUGGU----------UCG- -5'
15437 5' -52.7 NC_003930.1 + 1693 0.69 0.272815
Target:  5'- aGACaUGCCGUCGCCgGCUUCcuCCucGUc -3'
miRNA:   3'- cCUG-ACGGCAGUGG-UGAAGu-GGuuCG- -5'
15437 5' -52.7 NC_003930.1 + 5355 0.75 0.101733
Target:  5'- uGGCUGCCaguGUCGCCGCgagUCACaCAgccAGCa -3'
miRNA:   3'- cCUGACGG---CAGUGGUGa--AGUG-GU---UCG- -5'
15437 5' -52.7 NC_003930.1 + 10919 1.15 0.000079
Target:  5'- uGGACUGCCGUCACCACUUCACCAAGCg -3'
miRNA:   3'- -CCUGACGGCAGUGGUGAAGUGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.