miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1544 5' -58.1 NC_001347.2 + 89173 0.71 0.66383
Target:  5'- uGCUGCGUgGUGAgCCGGUGCUGCg-- -3'
miRNA:   3'- gCGGCGCAgUACU-GGCUGCGACGaga -5'
1544 5' -58.1 NC_001347.2 + 89646 0.71 0.654059
Target:  5'- uCGCCgGCGUCAUcGACCcggccugcuGACGC-GCUCg -3'
miRNA:   3'- -GCGG-CGCAGUA-CUGG---------CUGCGaCGAGa -5'
1544 5' -58.1 NC_001347.2 + 98004 0.75 0.454878
Target:  5'- aCGCCGCGUCGUGccaacCCGGCGUcggacGCUCc -3'
miRNA:   3'- -GCGGCGCAGUACu----GGCUGCGa----CGAGa -5'
1544 5' -58.1 NC_001347.2 + 103719 0.69 0.794596
Target:  5'- uGCUGCGUCGUGACggcgccuaaGACGUUGaUCg -3'
miRNA:   3'- gCGGCGCAGUACUGg--------CUGCGACgAGa -5'
1544 5' -58.1 NC_001347.2 + 105161 0.73 0.547022
Target:  5'- aCGCCGCGcCcgGugCaGACGUUGUUCg -3'
miRNA:   3'- -GCGGCGCaGuaCugG-CUGCGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 111102 0.66 0.911414
Target:  5'- -uCCGCGUCAcgcUGACCGGCGaucaggccGUUCa -3'
miRNA:   3'- gcGGCGCAGU---ACUGGCUGCga------CGAGa -5'
1544 5' -58.1 NC_001347.2 + 115037 0.66 0.899545
Target:  5'- cCGUCGCGUCc-GACgCGACGgUGUUUUc -3'
miRNA:   3'- -GCGGCGCAGuaCUG-GCUGCgACGAGA- -5'
1544 5' -58.1 NC_001347.2 + 116674 0.69 0.785872
Target:  5'- cCGCCGcCGUCGccaccuCCGGCGCUGUccUCg -3'
miRNA:   3'- -GCGGC-GCAGUacu---GGCUGCGACG--AGa -5'
1544 5' -58.1 NC_001347.2 + 125835 0.67 0.843867
Target:  5'- aGCUGCaUCGUG-CCGGCGCgacgaugacGCUCg -3'
miRNA:   3'- gCGGCGcAGUACuGGCUGCGa--------CGAGa -5'
1544 5' -58.1 NC_001347.2 + 126676 0.66 0.911414
Target:  5'- cCGgCGCGUgGUGGCuuaCGACGCUGacgCg -3'
miRNA:   3'- -GCgGCGCAgUACUG---GCUGCGACga-Ga -5'
1544 5' -58.1 NC_001347.2 + 128338 0.76 0.37962
Target:  5'- -cCCGCGU-GUGGCCGcCGCUGCUCg -3'
miRNA:   3'- gcGGCGCAgUACUGGCuGCGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 130100 0.66 0.905587
Target:  5'- -aCCGCGcCAUGGCCuAUGUgUGCUCUu -3'
miRNA:   3'- gcGGCGCaGUACUGGcUGCG-ACGAGA- -5'
1544 5' -58.1 NC_001347.2 + 136285 0.7 0.740505
Target:  5'- cCGCCGCGgccCAUGcCCGGCaCgggGCUCg -3'
miRNA:   3'- -GCGGCGCa--GUACuGGCUGcGa--CGAGa -5'
1544 5' -58.1 NC_001347.2 + 141376 0.66 0.917024
Target:  5'- -uCCGCGUCGUaauCCGGCuaaggGCUGCUUg -3'
miRNA:   3'- gcGGCGCAGUAcu-GGCUG-----CGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 142056 0.73 0.566229
Target:  5'- gGCuaCGCGUC-UGGCCGACG-UGCUCa -3'
miRNA:   3'- gCG--GCGCAGuACUGGCUGCgACGAGa -5'
1544 5' -58.1 NC_001347.2 + 142133 0.74 0.51862
Target:  5'- -aCCGCGUCAUG-CUGGCGCUGgaCg -3'
miRNA:   3'- gcGGCGCAGUACuGGCUGCGACgaGa -5'
1544 5' -58.1 NC_001347.2 + 148599 0.72 0.575899
Target:  5'- aGCgGCGgCGUGACCGGCGgUGCg-- -3'
miRNA:   3'- gCGgCGCaGUACUGGCUGCgACGaga -5'
1544 5' -58.1 NC_001347.2 + 148622 0.66 0.917024
Target:  5'- gGUCGCGg-GUGGCCGGCGUcagcGUUCg -3'
miRNA:   3'- gCGGCGCagUACUGGCUGCGa---CGAGa -5'
1544 5' -58.1 NC_001347.2 + 151319 0.68 0.836057
Target:  5'- uGuCCGCuuUCGUGGCCuGACGCcgcagGCUCUg -3'
miRNA:   3'- gC-GGCGc-AGUACUGG-CUGCGa----CGAGA- -5'
1544 5' -58.1 NC_001347.2 + 153267 0.67 0.866214
Target:  5'- uCGCCGUGguuguUGGCCGACGUaGCg-- -3'
miRNA:   3'- -GCGGCGCagu--ACUGGCUGCGaCGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.