miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1544 5' -58.1 NC_001347.2 + 1902 0.67 0.873285
Target:  5'- uGCUGCGgc-UGGCUGGCGCUGggCg -3'
miRNA:   3'- gCGGCGCaguACUGGCUGCGACgaGa -5'
1544 5' -58.1 NC_001347.2 + 2629 0.67 0.866214
Target:  5'- aCGCCGC------GCCGACGCUcaaGCUCUg -3'
miRNA:   3'- -GCGGCGcaguacUGGCUGCGA---CGAGA- -5'
1544 5' -58.1 NC_001347.2 + 4871 0.71 0.654059
Target:  5'- uCGCCGuCG-CAUcGCCccgaGGCGCUGCUCUg -3'
miRNA:   3'- -GCGGC-GCaGUAcUGG----CUGCGACGAGA- -5'
1544 5' -58.1 NC_001347.2 + 14283 0.66 0.917024
Target:  5'- gCGCUGCaGUUAUG-CCGcCGgaGCUCc -3'
miRNA:   3'- -GCGGCG-CAGUACuGGCuGCgaCGAGa -5'
1544 5' -58.1 NC_001347.2 + 15359 0.7 0.721695
Target:  5'- aCGCCGCGUUgcccgAUGAgCGACGCgaGCg-- -3'
miRNA:   3'- -GCGGCGCAG-----UACUgGCUGCGa-CGaga -5'
1544 5' -58.1 NC_001347.2 + 16377 0.66 0.886827
Target:  5'- uGCUGCGUCAcggucaUGacGCCGACGCguugGC-Cg -3'
miRNA:   3'- gCGGCGCAGU------AC--UGGCUGCGa---CGaGa -5'
1544 5' -58.1 NC_001347.2 + 17653 0.74 0.481707
Target:  5'- aGCCGCGauUCGU--CUGACGCUGCUCc -3'
miRNA:   3'- gCGGCGC--AGUAcuGGCUGCGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 18410 0.67 0.8515
Target:  5'- aCGCCGgGUCGc-ACCGAgguggagcCGUUGCUCa -3'
miRNA:   3'- -GCGGCgCAGUacUGGCU--------GCGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 26133 0.66 0.911414
Target:  5'- aGCCGCGUCcgcggaaacGACgGACGCUaCUUUc -3'
miRNA:   3'- gCGGCGCAGua-------CUGgCUGCGAcGAGA- -5'
1544 5' -58.1 NC_001347.2 + 38669 0.69 0.749784
Target:  5'- gCGCCacCGUCGUGccggcccaccGCCGGCGCaGCUCc -3'
miRNA:   3'- -GCGGc-GCAGUAC----------UGGCUGCGaCGAGa -5'
1544 5' -58.1 NC_001347.2 + 40438 0.72 0.624678
Target:  5'- gGCCGUaagcguGUUGUGuCCGACGCUGC-CUg -3'
miRNA:   3'- gCGGCG------CAGUACuGGCUGCGACGaGA- -5'
1544 5' -58.1 NC_001347.2 + 40564 0.66 0.899545
Target:  5'- uGCCuGUGUCGUu-UCGGCGCUGCg-- -3'
miRNA:   3'- gCGG-CGCAGUAcuGGCUGCGACGaga -5'
1544 5' -58.1 NC_001347.2 + 40682 0.66 0.911414
Target:  5'- gGuuGCG-CuggGGCCGGgGCUGUUCg -3'
miRNA:   3'- gCggCGCaGua-CUGGCUgCGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 53673 0.67 0.873285
Target:  5'- cCG-CGCGUCAUGAgucccaaagacCUGACGCcGUUCUu -3'
miRNA:   3'- -GCgGCGCAGUACU-----------GGCUGCGaCGAGA- -5'
1544 5' -58.1 NC_001347.2 + 63053 0.67 0.858951
Target:  5'- gGCgGCGUCAUGGgUGGCGgaGgaCUg -3'
miRNA:   3'- gCGgCGCAGUACUgGCUGCgaCgaGA- -5'
1544 5' -58.1 NC_001347.2 + 74849 0.68 0.819935
Target:  5'- cCGCCGCGaaA-GGCCG-CGCUGCa-- -3'
miRNA:   3'- -GCGGCGCagUaCUGGCuGCGACGaga -5'
1544 5' -58.1 NC_001347.2 + 75772 0.68 0.836057
Target:  5'- aCGCCGUcucGUCGUuGCCGcCGgUGCUCc -3'
miRNA:   3'- -GCGGCG---CAGUAcUGGCuGCgACGAGa -5'
1544 5' -58.1 NC_001347.2 + 82221 0.66 0.899545
Target:  5'- -uCCGCGguaugCGUGACCacACGCgGCUCg -3'
miRNA:   3'- gcGGCGCa----GUACUGGc-UGCGaCGAGa -5'
1544 5' -58.1 NC_001347.2 + 85659 0.69 0.77702
Target:  5'- cCGCCGCGUCGUG-CCucCGCagcacGUUCUg -3'
miRNA:   3'- -GCGGCGCAGUACuGGcuGCGa----CGAGA- -5'
1544 5' -58.1 NC_001347.2 + 86755 0.66 0.917024
Target:  5'- cCGUCGC-UCGUGGCCaacaGACGCUccacGUUCUu -3'
miRNA:   3'- -GCGGCGcAGUACUGG----CUGCGA----CGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.