miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1544 5' -58.1 NC_001347.2 + 210522 1.08 0.003642
Target:  5'- uCGCCGCGUCAUGACCGACGCUGCUCUg -3'
miRNA:   3'- -GCGGCGCAGUACUGGCUGCGACGAGA- -5'
1544 5' -58.1 NC_001347.2 + 128338 0.76 0.37962
Target:  5'- -cCCGCGU-GUGGCCGcCGCUGCUCg -3'
miRNA:   3'- gcGGCGCAgUACUGGCuGCGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 98004 0.75 0.454878
Target:  5'- aCGCCGCGUCGUGccaacCCGGCGUcggacGCUCc -3'
miRNA:   3'- -GCGGCGCAGUACu----GGCUGCGa----CGAGa -5'
1544 5' -58.1 NC_001347.2 + 17653 0.74 0.481707
Target:  5'- aGCCGCGauUCGU--CUGACGCUGCUCc -3'
miRNA:   3'- gCGGCGC--AGUAcuGGCUGCGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 194045 0.74 0.509281
Target:  5'- uCGUgCGCGUgG-GGCUGGCGCUGCUCa -3'
miRNA:   3'- -GCG-GCGCAgUaCUGGCUGCGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 142133 0.74 0.51862
Target:  5'- -aCCGCGUCAUG-CUGGCGCUGgaCg -3'
miRNA:   3'- gcGGCGCAGUACuGGCUGCGACgaGa -5'
1544 5' -58.1 NC_001347.2 + 105161 0.73 0.547022
Target:  5'- aCGCCGCGcCcgGugCaGACGUUGUUCg -3'
miRNA:   3'- -GCGGCGCaGuaCugG-CUGCGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 208121 0.73 0.556602
Target:  5'- aGCCGCGUCGcucGCCGGCGCUcGUcaUCUg -3'
miRNA:   3'- gCGGCGCAGUac-UGGCUGCGA-CG--AGA- -5'
1544 5' -58.1 NC_001347.2 + 142056 0.73 0.566229
Target:  5'- gGCuaCGCGUC-UGGCCGACG-UGCUCa -3'
miRNA:   3'- gCG--GCGCAGuACUGGCUGCgACGAGa -5'
1544 5' -58.1 NC_001347.2 + 148599 0.72 0.575899
Target:  5'- aGCgGCGgCGUGACCGGCGgUGCg-- -3'
miRNA:   3'- gCGgCGCaGUACUGGCUGCgACGaga -5'
1544 5' -58.1 NC_001347.2 + 169196 0.72 0.595343
Target:  5'- gGCUGCGUCAaGACCGucuCGCUGggCa -3'
miRNA:   3'- gCGGCGCAGUaCUGGCu--GCGACgaGa -5'
1544 5' -58.1 NC_001347.2 + 40438 0.72 0.624678
Target:  5'- gGCCGUaagcguGUUGUGuCCGACGCUGC-CUg -3'
miRNA:   3'- gCGGCG------CAGUACuGGCUGCGACGaGA- -5'
1544 5' -58.1 NC_001347.2 + 4871 0.71 0.654059
Target:  5'- uCGCCGuCG-CAUcGCCccgaGGCGCUGCUCUg -3'
miRNA:   3'- -GCGGC-GCaGUAcUGG----CUGCGACGAGA- -5'
1544 5' -58.1 NC_001347.2 + 89646 0.71 0.654059
Target:  5'- uCGCCgGCGUCAUcGACCcggccugcuGACGC-GCUCg -3'
miRNA:   3'- -GCGG-CGCAGUA-CUGG---------CUGCGaCGAGa -5'
1544 5' -58.1 NC_001347.2 + 89173 0.71 0.66383
Target:  5'- uGCUGCGUgGUGAgCCGGUGCUGCg-- -3'
miRNA:   3'- gCGGCGCAgUACU-GGCUGCGACGaga -5'
1544 5' -58.1 NC_001347.2 + 182292 0.71 0.683294
Target:  5'- uGCgGCGUCGUuGCCGggGCGgCUGCUCc -3'
miRNA:   3'- gCGgCGCAGUAcUGGC--UGC-GACGAGa -5'
1544 5' -58.1 NC_001347.2 + 210181 0.7 0.721695
Target:  5'- -cUCGCGUCGUGcCUGACGgUGCUUUc -3'
miRNA:   3'- gcGGCGCAGUACuGGCUGCgACGAGA- -5'
1544 5' -58.1 NC_001347.2 + 15359 0.7 0.721695
Target:  5'- aCGCCGCGUUgcccgAUGAgCGACGCgaGCg-- -3'
miRNA:   3'- -GCGGCGCAG-----UACUgGCUGCGa-CGaga -5'
1544 5' -58.1 NC_001347.2 + 136285 0.7 0.740505
Target:  5'- cCGCCGCGgccCAUGcCCGGCaCgggGCUCg -3'
miRNA:   3'- -GCGGCGCa--GUACuGGCUGcGa--CGAGa -5'
1544 5' -58.1 NC_001347.2 + 167423 0.7 0.740505
Target:  5'- aGCCGa-UCAacgugGAUCGAUGCUGCUCc -3'
miRNA:   3'- gCGGCgcAGUa----CUGGCUGCGACGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.