miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1545 3' -57.7 NC_001347.2 + 193766 0.66 0.926698
Target:  5'- aGGCGCACCGC--GAGGCGCAa---- -3'
miRNA:   3'- cUUGCGUGGUGgcCUCCGCGUagcuc -5'
1545 3' -57.7 NC_001347.2 + 139556 0.66 0.926698
Target:  5'- -cGCGCAgCGCUuuuguGGAGGCGCGagGGc -3'
miRNA:   3'- cuUGCGUgGUGG-----CCUCCGCGUagCUc -5'
1545 3' -57.7 NC_001347.2 + 84594 0.66 0.926698
Target:  5'- cGAGCGCACCGCguuuuucuUGGAGcCGUcgUGGGu -3'
miRNA:   3'- -CUUGCGUGGUG--------GCCUCcGCGuaGCUC- -5'
1545 3' -57.7 NC_001347.2 + 39781 0.66 0.921461
Target:  5'- -cGCGUACCACUGGA-GCGCAc---- -3'
miRNA:   3'- cuUGCGUGGUGGCCUcCGCGUagcuc -5'
1545 3' -57.7 NC_001347.2 + 80209 0.66 0.916003
Target:  5'- cGAGCGCAcCCACUcGucGCGCuccUCGAGc -3'
miRNA:   3'- -CUUGCGU-GGUGGcCucCGCGu--AGCUC- -5'
1545 3' -57.7 NC_001347.2 + 68720 0.66 0.916003
Target:  5'- cGAGCGCAacgcUCGUCGGAGGC-CGUgGAGc -3'
miRNA:   3'- -CUUGCGU----GGUGGCCUCCGcGUAgCUC- -5'
1545 3' -57.7 NC_001347.2 + 171134 0.66 0.916003
Target:  5'- -uACGCGa-GaaGGAGGUGCAUCGAc -3'
miRNA:   3'- cuUGCGUggUggCCUCCGCGUAGCUc -5'
1545 3' -57.7 NC_001347.2 + 67878 0.66 0.898313
Target:  5'- --gUGCGCUACgGGAGGCuCA-CGAGu -3'
miRNA:   3'- cuuGCGUGGUGgCCUCCGcGUaGCUC- -5'
1545 3' -57.7 NC_001347.2 + 100946 0.66 0.89769
Target:  5'- -cACGcCGCCGCCGcGAuggagaacuggucGGCGC-UCGAGc -3'
miRNA:   3'- cuUGC-GUGGUGGC-CU-------------CCGCGuAGCUC- -5'
1545 3' -57.7 NC_001347.2 + 77935 0.67 0.885447
Target:  5'- -uGCGCucggaGCgGCUGGAGGCGCAgcugcgCGGc -3'
miRNA:   3'- cuUGCG-----UGgUGGCCUCCGCGUa-----GCUc -5'
1545 3' -57.7 NC_001347.2 + 98292 0.67 0.867486
Target:  5'- cAACGCGCCcagcACCucgacuaacacuuuGAGGCGCGUgCGAGg -3'
miRNA:   3'- cUUGCGUGG----UGGc-------------CUCCGCGUA-GCUC- -5'
1545 3' -57.7 NC_001347.2 + 151652 0.67 0.864603
Target:  5'- cGGCGUGCCACgCGGuuucuGGCGUAUCu-- -3'
miRNA:   3'- cUUGCGUGGUG-GCCu----CCGCGUAGcuc -5'
1545 3' -57.7 NC_001347.2 + 195900 0.67 0.864603
Target:  5'- cGGCGCuuuCCGCCGucuGGUGCA-CGAGg -3'
miRNA:   3'- cUUGCGu--GGUGGCcu-CCGCGUaGCUC- -5'
1545 3' -57.7 NC_001347.2 + 1789 0.67 0.86022
Target:  5'- cGAugGUACUGCUGGGcgcguggcaggagcuGGCGCAguaCGAGc -3'
miRNA:   3'- -CUugCGUGGUGGCCU---------------CCGCGUa--GCUC- -5'
1545 3' -57.7 NC_001347.2 + 143728 0.68 0.84973
Target:  5'- ---gGCAucUCGCCGGuGGCGCGUCaGGa -3'
miRNA:   3'- cuugCGU--GGUGGCCuCCGCGUAGcUC- -5'
1545 3' -57.7 NC_001347.2 + 125281 0.68 0.848967
Target:  5'- uGAACG-ACCGCCGGuGGCGUcaguggcgcaaccGUCGcAGc -3'
miRNA:   3'- -CUUGCgUGGUGGCCuCCGCG-------------UAGC-UC- -5'
1545 3' -57.7 NC_001347.2 + 40468 0.68 0.842017
Target:  5'- -uGCGCACUGCCGGu-GCGUGUCGu- -3'
miRNA:   3'- cuUGCGUGGUGGCCucCGCGUAGCuc -5'
1545 3' -57.7 NC_001347.2 + 199783 0.68 0.842017
Target:  5'- cGGCGCcgguGCCGCCGGucucGCGCA-CGAGc -3'
miRNA:   3'- cUUGCG----UGGUGGCCuc--CGCGUaGCUC- -5'
1545 3' -57.7 NC_001347.2 + 2102 0.68 0.842017
Target:  5'- ---gGCGCCGCCGGcGGGgGCG-CGAu -3'
miRNA:   3'- cuugCGUGGUGGCC-UCCgCGUaGCUc -5'
1545 3' -57.7 NC_001347.2 + 24018 0.68 0.826067
Target:  5'- -cACGCGCCACCGGGGccaccaaCGCGgccuccauuUCGGGc -3'
miRNA:   3'- cuUGCGUGGUGGCCUCc------GCGU---------AGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.