miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1545 3' -57.7 NC_001347.2 + 229505 0.7 0.737725
Target:  5'- --cCGCACCGgCGGuguuuuGGGUGUGUCGGGg -3'
miRNA:   3'- cuuGCGUGGUgGCC------UCCGCGUAGCUC- -5'
1545 3' -57.7 NC_001347.2 + 229416 0.69 0.774537
Target:  5'- gGGACGaCACgCACCGGcagugcgcAGGCaGCGUCGGa -3'
miRNA:   3'- -CUUGC-GUG-GUGGCC--------UCCG-CGUAGCUc -5'
1545 3' -57.7 NC_001347.2 + 209090 1.09 0.003071
Target:  5'- cGAACGCACCACCGGAGGCGCAUCGAGg -3'
miRNA:   3'- -CUUGCGUGGUGGCCUCCGCGUAGCUC- -5'
1545 3' -57.7 NC_001347.2 + 208103 0.7 0.737725
Target:  5'- uGGGCGCACCGacggCGGAGcCGCGUCGc- -3'
miRNA:   3'- -CUUGCGUGGUg---GCCUCcGCGUAGCuc -5'
1545 3' -57.7 NC_001347.2 + 206707 0.7 0.756334
Target:  5'- ---gGgGCCGCaCGGAGcGCGaCGUCGAGg -3'
miRNA:   3'- cuugCgUGGUG-GCCUC-CGC-GUAGCUC- -5'
1545 3' -57.7 NC_001347.2 + 199783 0.68 0.842017
Target:  5'- cGGCGCcgguGCCGCCGGucucGCGCA-CGAGc -3'
miRNA:   3'- cUUGCG----UGGUGGCCuc--CGCGUaGCUC- -5'
1545 3' -57.7 NC_001347.2 + 198902 0.68 0.826067
Target:  5'- aGAGCGCGCCG-CGcGAGGUGUAgUGGGc -3'
miRNA:   3'- -CUUGCGUGGUgGC-CUCCGCGUaGCUC- -5'
1545 3' -57.7 NC_001347.2 + 195900 0.67 0.864603
Target:  5'- cGGCGCuuuCCGCCGucuGGUGCA-CGAGg -3'
miRNA:   3'- cUUGCGu--GGUGGCcu-CCGCGUaGCUC- -5'
1545 3' -57.7 NC_001347.2 + 193766 0.66 0.926698
Target:  5'- aGGCGCACCGC--GAGGCGCAa---- -3'
miRNA:   3'- cUUGCGUGGUGgcCUCCGCGUagcuc -5'
1545 3' -57.7 NC_001347.2 + 174330 0.73 0.580974
Target:  5'- gGAACGCA-CGCUGGAGGaCGCgcuggcuGUCGAGc -3'
miRNA:   3'- -CUUGCGUgGUGGCCUCC-GCG-------UAGCUC- -5'
1545 3' -57.7 NC_001347.2 + 171134 0.66 0.916003
Target:  5'- -uACGCGa-GaaGGAGGUGCAUCGAc -3'
miRNA:   3'- cuUGCGUggUggCCUCCGCGUAGCUc -5'
1545 3' -57.7 NC_001347.2 + 170780 0.69 0.792268
Target:  5'- -uGCGCAUCGCCGu-GGCGUugacggccgcuAUCGAGa -3'
miRNA:   3'- cuUGCGUGGUGGCcuCCGCG-----------UAGCUC- -5'
1545 3' -57.7 NC_001347.2 + 151652 0.67 0.864603
Target:  5'- cGGCGUGCCACgCGGuuucuGGCGUAUCu-- -3'
miRNA:   3'- cUUGCGUGGUG-GCCu----CCGCGUAGcuc -5'
1545 3' -57.7 NC_001347.2 + 151223 0.74 0.533693
Target:  5'- cAGCGCGuuACCGGAGGgGC-UCGAa -3'
miRNA:   3'- cUUGCGUggUGGCCUCCgCGuAGCUc -5'
1545 3' -57.7 NC_001347.2 + 143728 0.68 0.84973
Target:  5'- ---gGCAucUCGCCGGuGGCGCGUCaGGa -3'
miRNA:   3'- cuugCGU--GGUGGCCuCCGCGUAGcUC- -5'
1545 3' -57.7 NC_001347.2 + 139556 0.66 0.926698
Target:  5'- -cGCGCAgCGCUuuuguGGAGGCGCGagGGc -3'
miRNA:   3'- cuUGCGUgGUGG-----CCUCCGCGUagCUc -5'
1545 3' -57.7 NC_001347.2 + 133756 0.71 0.670343
Target:  5'- --uCGC-CUACCGGAGGCGgGaUCGGGc -3'
miRNA:   3'- cuuGCGuGGUGGCCUCCGCgU-AGCUC- -5'
1545 3' -57.7 NC_001347.2 + 125281 0.68 0.848967
Target:  5'- uGAACG-ACCGCCGGuGGCGUcaguggcgcaaccGUCGcAGc -3'
miRNA:   3'- -CUUGCgUGGUGGCCuCCGCG-------------UAGC-UC- -5'
1545 3' -57.7 NC_001347.2 + 114618 0.69 0.783465
Target:  5'- -cACGCGCCACUGGGGuGCcgaaGCGUaCGAa -3'
miRNA:   3'- cuUGCGUGGUGGCCUC-CG----CGUA-GCUc -5'
1545 3' -57.7 NC_001347.2 + 100946 0.66 0.89769
Target:  5'- -cACGcCGCCGCCGcGAuggagaacuggucGGCGC-UCGAGc -3'
miRNA:   3'- cuUGC-GUGGUGGC-CU-------------CCGCGuAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.