miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1551 5' -58.4 NC_001347.2 + 108306 0.67 0.867463
Target:  5'- -cGCCgGugCUgCCGCAcgagacGCGACUCCUGCa -3'
miRNA:   3'- gcUGG-CugGA-GGCGU------CGUUGGGGAUG- -5'
1551 5' -58.4 NC_001347.2 + 117559 0.73 0.529919
Target:  5'- uGACCacGCCga-GCAGCAGCUCCUGCg -3'
miRNA:   3'- gCUGGc-UGGaggCGUCGUUGGGGAUG- -5'
1551 5' -58.4 NC_001347.2 + 131726 0.7 0.704407
Target:  5'- aCGACCGGCCgucgccgccgCCGCGGUuGCUaCUACu -3'
miRNA:   3'- -GCUGGCUGGa---------GGCGUCGuUGGgGAUG- -5'
1551 5' -58.4 NC_001347.2 + 135613 0.68 0.79616
Target:  5'- uCGGCCGACCgCCGCG---ACCCCc-- -3'
miRNA:   3'- -GCUGGCUGGaGGCGUcguUGGGGaug -5'
1551 5' -58.4 NC_001347.2 + 157286 0.68 0.787465
Target:  5'- uCGGCgGuCCUCCaGCAGCAGCUggUGCa -3'
miRNA:   3'- -GCUGgCuGGAGG-CGUCGUUGGggAUG- -5'
1551 5' -58.4 NC_001347.2 + 160705 0.66 0.906595
Target:  5'- gCGAUCGGCggCCGU--CAGCUCCUGCu -3'
miRNA:   3'- -GCUGGCUGgaGGCGucGUUGGGGAUG- -5'
1551 5' -58.4 NC_001347.2 + 168221 0.75 0.422167
Target:  5'- gGGCCGcGCCUCCGUGGCAGCCguuuccagCUGCg -3'
miRNA:   3'- gCUGGC-UGGAGGCGUCGUUGGg-------GAUG- -5'
1551 5' -58.4 NC_001347.2 + 174243 0.66 0.884003
Target:  5'- uCGGaCGACCUCCGCGucggucgccgccuccGCGGCCCg--- -3'
miRNA:   3'- -GCUgGCUGGAGGCGU---------------CGUUGGGgaug -5'
1551 5' -58.4 NC_001347.2 + 175000 0.7 0.694792
Target:  5'- gGGCCGuGCCgguggagUCGCAGCAGCgCCUGg -3'
miRNA:   3'- gCUGGC-UGGa------GGCGUCGUUGgGGAUg -5'
1551 5' -58.4 NC_001347.2 + 183477 0.66 0.874494
Target:  5'- --cUCGGCCUCgggagaCGCGcGCAGCCCCaGCg -3'
miRNA:   3'- gcuGGCUGGAG------GCGU-CGUUGGGGaUG- -5'
1551 5' -58.4 NC_001347.2 + 191829 0.68 0.787465
Target:  5'- uCGugCGACCUuuugaCCGCGGUggUgCCUGu -3'
miRNA:   3'- -GCugGCUGGA-----GGCGUCGuuGgGGAUg -5'
1551 5' -58.4 NC_001347.2 + 193236 0.68 0.80387
Target:  5'- uGGCCGACCUgUGCGugcgacGCGACUaugagggCCUGCg -3'
miRNA:   3'- gCUGGCUGGAgGCGU------CGUUGG-------GGAUG- -5'
1551 5' -58.4 NC_001347.2 + 193663 0.69 0.731947
Target:  5'- -cGCCGcucgcgcGCCUCCGCucGCGGCCgCUACc -3'
miRNA:   3'- gcUGGC-------UGGAGGCGu-CGUUGGgGAUG- -5'
1551 5' -58.4 NC_001347.2 + 196139 0.66 0.887957
Target:  5'- uCGGCCGcuGCCUgC-CGGCGGCCCUgUGCc -3'
miRNA:   3'- -GCUGGC--UGGAgGcGUCGUUGGGG-AUG- -5'
1551 5' -58.4 NC_001347.2 + 196882 0.7 0.704407
Target:  5'- gGAuucCCGACUaCCGCAGCGugUCgCUGCg -3'
miRNA:   3'- gCU---GGCUGGaGGCGUCGUugGG-GAUG- -5'
1551 5' -58.4 NC_001347.2 + 198832 0.66 0.89438
Target:  5'- uCGACCGAaagcagCCGgAGCAuGCCCCg-- -3'
miRNA:   3'- -GCUGGCUgga---GGCgUCGU-UGGGGaug -5'
1551 5' -58.4 NC_001347.2 + 199684 0.66 0.906595
Target:  5'- -uGCCGGCCUugggugUCGcCGGCgAGCCCCgagGCg -3'
miRNA:   3'- gcUGGCUGGA------GGC-GUCG-UUGGGGa--UG- -5'
1551 5' -58.4 NC_001347.2 + 202346 0.68 0.821402
Target:  5'- aGGUCGcGCCgCCGCAGCAucccgcauaGCCUCUACa -3'
miRNA:   3'- gCUGGC-UGGaGGCGUCGU---------UGGGGAUG- -5'
1551 5' -58.4 NC_001347.2 + 203473 1.08 0.003218
Target:  5'- uCGACCGACCUCCGCAGCAACCCCUACc -3'
miRNA:   3'- -GCUGGCUGGAGGCGUCGUUGGGGAUG- -5'
1551 5' -58.4 NC_001347.2 + 208039 0.66 0.887957
Target:  5'- gGACCGACgUCggaguCGCGGCGuucguuggcGCCgCUGCc -3'
miRNA:   3'- gCUGGCUGgAG-----GCGUCGU---------UGGgGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.