miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1551 5' -58.4 NC_001347.2 + 12435 0.7 0.712059
Target:  5'- gCGugUGACCUgucguuaUCGCGGCGaaugcguGCCUCUGCg -3'
miRNA:   3'- -GCugGCUGGA-------GGCGUCGU-------UGGGGAUG- -5'
1551 5' -58.4 NC_001347.2 + 24856 0.66 0.900594
Target:  5'- -cAUCGuCUUCaCGCGGCccuggacuuGGCCCCUGCg -3'
miRNA:   3'- gcUGGCuGGAG-GCGUCG---------UUGGGGAUG- -5'
1551 5' -58.4 NC_001347.2 + 30453 0.68 0.787465
Target:  5'- gGGCCGaACC-CCGuCAGC-ACCCCg-- -3'
miRNA:   3'- gCUGGC-UGGaGGC-GUCGuUGGGGaug -5'
1551 5' -58.4 NC_001347.2 + 31439 0.68 0.79616
Target:  5'- -cGCUGG-CUCaCGcCGGCAACCCCUAUg -3'
miRNA:   3'- gcUGGCUgGAG-GC-GUCGUUGGGGAUG- -5'
1551 5' -58.4 NC_001347.2 + 38460 0.67 0.860238
Target:  5'- -cGCCGGCCccgCCGC-GCAGCCCa--- -3'
miRNA:   3'- gcUGGCUGGa--GGCGuCGUUGGGgaug -5'
1551 5' -58.4 NC_001347.2 + 39130 0.67 0.860238
Target:  5'- aCGGCCGuCCgagCgGCAGCAGCgugCCCg-- -3'
miRNA:   3'- -GCUGGCuGGa--GgCGUCGUUG---GGGaug -5'
1551 5' -58.4 NC_001347.2 + 39169 0.66 0.874494
Target:  5'- gCGACC-ACUUgCGCAuggcGCGGCCCgUGCu -3'
miRNA:   3'- -GCUGGcUGGAgGCGU----CGUUGGGgAUG- -5'
1551 5' -58.4 NC_001347.2 + 47453 0.71 0.646152
Target:  5'- uCGAUCGGCCUCgacgaacgagaCGCGGCGACgCCUcuccACg -3'
miRNA:   3'- -GCUGGCUGGAG-----------GCGUCGUUGgGGA----UG- -5'
1551 5' -58.4 NC_001347.2 + 62768 0.72 0.558507
Target:  5'- gCGGCCGACC-CCGCcguuGCGGCCgCCg-- -3'
miRNA:   3'- -GCUGGCUGGaGGCGu---CGUUGG-GGaug -5'
1551 5' -58.4 NC_001347.2 + 63240 0.75 0.413783
Target:  5'- -cGCCGGCCUCCGCGGCcgcuGCgCCCg-- -3'
miRNA:   3'- gcUGGCUGGAGGCGUCGu---UG-GGGaug -5'
1551 5' -58.4 NC_001347.2 + 65889 0.68 0.79616
Target:  5'- gGGCCGACCgCCGCcGCccUCCCUcaACa -3'
miRNA:   3'- gCUGGCUGGaGGCGuCGuuGGGGA--UG- -5'
1551 5' -58.4 NC_001347.2 + 68739 0.66 0.887303
Target:  5'- aGGCCGuggagcgaguGCCgCCGCAGCcggcagagcgccgAACCCCgucGCa -3'
miRNA:   3'- gCUGGC----------UGGaGGCGUCG-------------UUGGGGa--UG- -5'
1551 5' -58.4 NC_001347.2 + 73963 0.69 0.742229
Target:  5'- uGACCGACCgcaCGgAGCGACgCCgucgACu -3'
miRNA:   3'- gCUGGCUGGag-GCgUCGUUGgGGa---UG- -5'
1551 5' -58.4 NC_001347.2 + 77449 0.68 0.813136
Target:  5'- cCGugCGugCUgCGCaAGCAGCugCUCUACg -3'
miRNA:   3'- -GCugGCugGAgGCG-UCGUUG--GGGAUG- -5'
1551 5' -58.4 NC_001347.2 + 85655 0.75 0.413783
Target:  5'- aCGGCCGccgcgucguGCCUCCGCAGCAcgUUCUGCa -3'
miRNA:   3'- -GCUGGC---------UGGAGGCGUCGUugGGGAUG- -5'
1551 5' -58.4 NC_001347.2 + 88601 0.68 0.787465
Target:  5'- uGGgCGACCUgaGCGGCGGCggCCUGCg -3'
miRNA:   3'- gCUgGCUGGAggCGUCGUUGg-GGAUG- -5'
1551 5' -58.4 NC_001347.2 + 91170 0.69 0.760644
Target:  5'- uCGcCCGugCUCCgaggaGCAGCGcGCCuCCUACc -3'
miRNA:   3'- -GCuGGCugGAGG-----CGUCGU-UGG-GGAUG- -5'
1551 5' -58.4 NC_001347.2 + 93150 0.72 0.59725
Target:  5'- gGGCgGACCgcucucguUCCGCggcccgaaaAGCAGCUCCUGCg -3'
miRNA:   3'- gCUGgCUGG--------AGGCG---------UCGUUGGGGAUG- -5'
1551 5' -58.4 NC_001347.2 + 95351 0.67 0.852825
Target:  5'- uCGACaaaGAuaaaaacauCCUCCGUAguggcgugcGCGACCCCUAg -3'
miRNA:   3'- -GCUGg--CU---------GGAGGCGU---------CGUUGGGGAUg -5'
1551 5' -58.4 NC_001347.2 + 104617 0.67 0.844459
Target:  5'- gGACgcacaGACUUUCGCGGCcacacacAACCCCUGg -3'
miRNA:   3'- gCUGg----CUGGAGGCGUCG-------UUGGGGAUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.