Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1551 | 5' | -58.4 | NC_001347.2 | + | 203473 | 1.08 | 0.003218 |
Target: 5'- uCGACCGACCUCCGCAGCAACCCCUACc -3' miRNA: 3'- -GCUGGCUGGAGGCGUCGUUGGGGAUG- -5' |
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1551 | 5' | -58.4 | NC_001347.2 | + | 63240 | 0.75 | 0.413783 |
Target: 5'- -cGCCGGCCUCCGCGGCcgcuGCgCCCg-- -3' miRNA: 3'- gcUGGCUGGAGGCGUCGu---UG-GGGaug -5' |
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1551 | 5' | -58.4 | NC_001347.2 | + | 85655 | 0.75 | 0.413783 |
Target: 5'- aCGGCCGccgcgucguGCCUCCGCAGCAcgUUCUGCa -3' miRNA: 3'- -GCUGGC---------UGGAGGCGUCGUugGGGAUG- -5' |
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1551 | 5' | -58.4 | NC_001347.2 | + | 168221 | 0.75 | 0.422167 |
Target: 5'- gGGCCGcGCCUCCGUGGCAGCCguuuccagCUGCg -3' miRNA: 3'- gCUGGC-UGGAGGCGUCGUUGGg-------GAUG- -5' |
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1551 | 5' | -58.4 | NC_001347.2 | + | 117559 | 0.73 | 0.529919 |
Target: 5'- uGACCacGCCga-GCAGCAGCUCCUGCg -3' miRNA: 3'- gCUGGc-UGGaggCGUCGUUGGGGAUG- -5' |
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1551 | 5' | -58.4 | NC_001347.2 | + | 62768 | 0.72 | 0.558507 |
Target: 5'- gCGGCCGACC-CCGCcguuGCGGCCgCCg-- -3' miRNA: 3'- -GCUGGCUGGaGGCGu---CGUUGG-GGaug -5' |
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1551 | 5' | -58.4 | NC_001347.2 | + | 93150 | 0.72 | 0.59725 |
Target: 5'- gGGCgGACCgcucucguUCCGCggcccgaaaAGCAGCUCCUGCg -3' miRNA: 3'- gCUGgCUGG--------AGGCG---------UCGUUGGGGAUG- -5' |
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1551 | 5' | -58.4 | NC_001347.2 | + | 47453 | 0.71 | 0.646152 |
Target: 5'- uCGAUCGGCCUCgacgaacgagaCGCGGCGACgCCUcuccACg -3' miRNA: 3'- -GCUGGCUGGAG-----------GCGUCGUUGgGGA----UG- -5' |
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1551 | 5' | -58.4 | NC_001347.2 | + | 175000 | 0.7 | 0.694792 |
Target: 5'- gGGCCGuGCCgguggagUCGCAGCAGCgCCUGg -3' miRNA: 3'- gCUGGC-UGGa------GGCGUCGUUGgGGAUg -5' |
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1551 | 5' | -58.4 | NC_001347.2 | + | 196882 | 0.7 | 0.704407 |
Target: 5'- gGAuucCCGACUaCCGCAGCGugUCgCUGCg -3' miRNA: 3'- gCU---GGCUGGaGGCGUCGUugGG-GAUG- -5' |
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1551 | 5' | -58.4 | NC_001347.2 | + | 131726 | 0.7 | 0.704407 |
Target: 5'- aCGACCGGCCgucgccgccgCCGCGGUuGCUaCUACu -3' miRNA: 3'- -GCUGGCUGGa---------GGCGUCGuUGGgGAUG- -5' |
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1551 | 5' | -58.4 | NC_001347.2 | + | 12435 | 0.7 | 0.712059 |
Target: 5'- gCGugUGACCUgucguuaUCGCGGCGaaugcguGCCUCUGCg -3' miRNA: 3'- -GCugGCUGGA-------GGCGUCGU-------UGGGGAUG- -5' |
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1551 | 5' | -58.4 | NC_001347.2 | + | 193663 | 0.69 | 0.731947 |
Target: 5'- -cGCCGcucgcgcGCCUCCGCucGCGGCCgCUACc -3' miRNA: 3'- gcUGGC-------UGGAGGCGu-CGUUGGgGAUG- -5' |
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1551 | 5' | -58.4 | NC_001347.2 | + | 73963 | 0.69 | 0.742229 |
Target: 5'- uGACCGACCgcaCGgAGCGACgCCgucgACu -3' miRNA: 3'- gCUGGCUGGag-GCgUCGUUGgGGa---UG- -5' |
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1551 | 5' | -58.4 | NC_001347.2 | + | 91170 | 0.69 | 0.760644 |
Target: 5'- uCGcCCGugCUCCgaggaGCAGCGcGCCuCCUACc -3' miRNA: 3'- -GCuGGCugGAGG-----CGUCGU-UGG-GGAUG- -5' |
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1551 | 5' | -58.4 | NC_001347.2 | + | 30453 | 0.68 | 0.787465 |
Target: 5'- gGGCCGaACC-CCGuCAGC-ACCCCg-- -3' miRNA: 3'- gCUGGC-UGGaGGC-GUCGuUGGGGaug -5' |
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1551 | 5' | -58.4 | NC_001347.2 | + | 88601 | 0.68 | 0.787465 |
Target: 5'- uGGgCGACCUgaGCGGCGGCggCCUGCg -3' miRNA: 3'- gCUgGCUGGAggCGUCGUUGg-GGAUG- -5' |
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1551 | 5' | -58.4 | NC_001347.2 | + | 191829 | 0.68 | 0.787465 |
Target: 5'- uCGugCGACCUuuugaCCGCGGUggUgCCUGu -3' miRNA: 3'- -GCugGCUGGA-----GGCGUCGuuGgGGAUg -5' |
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1551 | 5' | -58.4 | NC_001347.2 | + | 157286 | 0.68 | 0.787465 |
Target: 5'- uCGGCgGuCCUCCaGCAGCAGCUggUGCa -3' miRNA: 3'- -GCUGgCuGGAGG-CGUCGUUGGggAUG- -5' |
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1551 | 5' | -58.4 | NC_001347.2 | + | 65889 | 0.68 | 0.79616 |
Target: 5'- gGGCCGACCgCCGCcGCccUCCCUcaACa -3' miRNA: 3'- gCUGGCUGGaGGCGuCGuuGGGGA--UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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