miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1553 5' -52.8 NC_001347.2 + 129485 0.71 0.906117
Target:  5'- aAGAAAAaaaGAGCGCgucugcAGCGCGgcGCCGCc -3'
miRNA:   3'- -UCUUUUac-UUCGCGa-----UCGCGC--CGGCG- -5'
1553 5' -52.8 NC_001347.2 + 98189 0.71 0.906117
Target:  5'- gAGggGAUGAacacaGGCcCgaugUGGCuGCGGCCGCc -3'
miRNA:   3'- -UCuuUUACU-----UCGcG----AUCG-CGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 26229 0.7 0.91219
Target:  5'- cGAAGAUGccguGUGUUGGCuacgGCGGaCCGCg -3'
miRNA:   3'- uCUUUUACuu--CGCGAUCG----CGCC-GGCG- -5'
1553 5' -52.8 NC_001347.2 + 82588 0.7 0.91219
Target:  5'- cGAAcguGUGAAGcCGCggcucGGCaCGGCCGCc -3'
miRNA:   3'- uCUUu--UACUUC-GCGa----UCGcGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 183451 0.7 0.91219
Target:  5'- uAGguGGUGAGGCGCggaUAGCGCgccucGGCCu- -3'
miRNA:   3'- -UCuuUUACUUCGCG---AUCGCG-----CCGGcg -5'
1553 5' -52.8 NC_001347.2 + 76163 0.7 0.91219
Target:  5'- gAGggGuUGcGGauggaGCUGG-GCGGCCGCa -3'
miRNA:   3'- -UCuuUuACuUCg----CGAUCgCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 142263 0.7 0.918026
Target:  5'- ------cGAGGCGCUGGC-CGcGUCGCu -3'
miRNA:   3'- ucuuuuaCUUCGCGAUCGcGC-CGGCG- -5'
1553 5' -52.8 NC_001347.2 + 77928 0.7 0.918026
Target:  5'- aAGAAGGUGcgcucgGAGCgGCUggaGGCGCaGCUGCg -3'
miRNA:   3'- -UCUUUUAC------UUCG-CGA---UCGCGcCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 136314 0.7 0.923623
Target:  5'- ---------cGCGCUcccuaGGUGCGGCCGCc -3'
miRNA:   3'- ucuuuuacuuCGCGA-----UCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 163612 0.7 0.934096
Target:  5'- aGGccAGUGucAGCGCcgAGcCGCGGCUGCc -3'
miRNA:   3'- -UCuuUUACu-UCGCGa-UC-GCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 105973 0.7 0.934096
Target:  5'- ------cGAGccGCGCacgcccGCGCGGCCGCa -3'
miRNA:   3'- ucuuuuaCUU--CGCGau----CGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 60701 0.69 0.938496
Target:  5'- gGGAAGAUGGGaCG-UGGUaacgaugGCGGCCGCg -3'
miRNA:   3'- -UCUUUUACUUcGCgAUCG-------CGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 187472 0.69 0.938973
Target:  5'- gAGAucGUGGAacgcGCGCUcguaAGCGCGGUCa- -3'
miRNA:   3'- -UCUuuUACUU----CGCGA----UCGCGCCGGcg -5'
1553 5' -52.8 NC_001347.2 + 18805 0.69 0.938973
Target:  5'- aAGAGAcGUGcuGCGCUGGCaCGG-CGCa -3'
miRNA:   3'- -UCUUU-UACuuCGCGAUCGcGCCgGCG- -5'
1553 5' -52.8 NC_001347.2 + 184684 0.69 0.943612
Target:  5'- gAGAcGGAUGGAGCGCgcccacauGUGCGGCgucuggUGCa -3'
miRNA:   3'- -UCU-UUUACUUCGCGau------CGCGCCG------GCG- -5'
1553 5' -52.8 NC_001347.2 + 167873 0.69 0.943612
Target:  5'- gGGAAAcAUGAGGcCGCUGGCGUca-CGCg -3'
miRNA:   3'- -UCUUU-UACUUC-GCGAUCGCGccgGCG- -5'
1553 5' -52.8 NC_001347.2 + 66902 0.69 0.948014
Target:  5'- cGggGA-GGAGCaGCUGGUguuucgauuGCGGCgGCa -3'
miRNA:   3'- uCuuUUaCUUCG-CGAUCG---------CGCCGgCG- -5'
1553 5' -52.8 NC_001347.2 + 182608 0.69 0.948014
Target:  5'- gAGGAGuuccAUGAAGCGCUugGGUGUaGGcCCGUc -3'
miRNA:   3'- -UCUUU----UACUUCGCGA--UCGCG-CC-GGCG- -5'
1553 5' -52.8 NC_001347.2 + 15546 0.69 0.948014
Target:  5'- cGGugugGAAGCaGCcgAGCGCgaGGCCGCu -3'
miRNA:   3'- uCUuuuaCUUCG-CGa-UCGCG--CCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 9202 0.69 0.948014
Target:  5'- gGGAAAA-GAGuCGCUGGCGaaacuCGGCCaGCa -3'
miRNA:   3'- -UCUUUUaCUUcGCGAUCGC-----GCCGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.