miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1553 5' -52.8 NC_001347.2 + 180290 0.67 0.979909
Target:  5'- ------aGAAGCGC-AGCGuCGGCgaGCg -3'
miRNA:   3'- ucuuuuaCUUCGCGaUCGC-GCCGg-CG- -5'
1553 5' -52.8 NC_001347.2 + 165104 0.67 0.979909
Target:  5'- aGGAAGGUGcGGCGgUGGuCGuuGUCGCu -3'
miRNA:   3'- -UCUUUUACuUCGCgAUC-GCgcCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 76606 0.67 0.979909
Target:  5'- cGAGAGguccucgcAGGCGgcGGCuGCGGCCGCg -3'
miRNA:   3'- uCUUUUac------UUCGCgaUCG-CGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 197675 0.67 0.979909
Target:  5'- uGAAGacGUGGAGCGCgcuGCGCagGGCagacuGCg -3'
miRNA:   3'- uCUUU--UACUUCGCGau-CGCG--CCGg----CG- -5'
1553 5' -52.8 NC_001347.2 + 138946 0.67 0.97763
Target:  5'- gAGGAAcuaaccGCGCUAGCGCcgguggGGcCCGCg -3'
miRNA:   3'- -UCUUUuacuu-CGCGAUCGCG------CC-GGCG- -5'
1553 5' -52.8 NC_001347.2 + 90901 0.67 0.97763
Target:  5'- aAGAuccaGGAGCGCUA-CGCGgaGCUGCa -3'
miRNA:   3'- -UCUuuuaCUUCGCGAUcGCGC--CGGCG- -5'
1553 5' -52.8 NC_001347.2 + 158094 0.67 0.97763
Target:  5'- ------cGccGCGCU-GCGCGGCgGCc -3'
miRNA:   3'- ucuuuuaCuuCGCGAuCGCGCCGgCG- -5'
1553 5' -52.8 NC_001347.2 + 197351 0.67 0.975166
Target:  5'- uAGAcGAUuuuauGCGCcgccAGCGCGGUCGCc -3'
miRNA:   3'- -UCUuUUAcuu--CGCGa---UCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 102412 0.67 0.975166
Target:  5'- cAGGAAcccAUGGgcGGUGC-GGCGCG-CCGCa -3'
miRNA:   3'- -UCUUU---UACU--UCGCGaUCGCGCcGGCG- -5'
1553 5' -52.8 NC_001347.2 + 190011 0.68 0.972511
Target:  5'- uGAAAccgGggGCG--AGCGCGGCUuuGCa -3'
miRNA:   3'- uCUUUua-CuuCGCgaUCGCGCCGG--CG- -5'
1553 5' -52.8 NC_001347.2 + 11984 0.68 0.969656
Target:  5'- uAGAGuuUGAGGacaucuuugGC-AGCGCGGCUGUc -3'
miRNA:   3'- -UCUUuuACUUCg--------CGaUCGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 31 0.68 0.969656
Target:  5'- cGGcgGUGuuuuGGGUGUgucggGGCGCGGCCGg -3'
miRNA:   3'- uCUuuUAC----UUCGCGa----UCGCGCCGGCg -5'
1553 5' -52.8 NC_001347.2 + 171278 0.68 0.966595
Target:  5'- uGuuAAUGAAGCGCUAccguGCGCGugaGCaGCg -3'
miRNA:   3'- uCuuUUACUUCGCGAU----CGCGC---CGgCG- -5'
1553 5' -52.8 NC_001347.2 + 169953 0.68 0.966595
Target:  5'- gGGGAGAUGAcAGCGagcucgAGgaGgGGCCGCu -3'
miRNA:   3'- -UCUUUUACU-UCGCga----UCg-CgCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 168969 0.68 0.966595
Target:  5'- uAGAGuucGAGGCGCagccgGGCGC-GCUGCu -3'
miRNA:   3'- -UCUUuuaCUUCGCGa----UCGCGcCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 228087 0.68 0.966595
Target:  5'- uGGAuaucGGUGAAGC---AGCGUGGCgGCg -3'
miRNA:   3'- -UCUu---UUACUUCGcgaUCGCGCCGgCG- -5'
1553 5' -52.8 NC_001347.2 + 37057 0.68 0.966595
Target:  5'- cGGccGcgGAGGUGCUG--GCGGCCGUg -3'
miRNA:   3'- -UCuuUuaCUUCGCGAUcgCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 77763 0.68 0.966595
Target:  5'- cGAGGcgGccgagcGGGCGCaauuuguacGCGCGGCCGUg -3'
miRNA:   3'- uCUUUuaC------UUCGCGau-------CGCGCCGGCG- -5'
1553 5' -52.8 NC_001347.2 + 44018 0.68 0.963323
Target:  5'- gAGGAAcgGAuaacGCGgUGGCGaCGGCaGCg -3'
miRNA:   3'- -UCUUUuaCUu---CGCgAUCGC-GCCGgCG- -5'
1553 5' -52.8 NC_001347.2 + 104332 0.68 0.959833
Target:  5'- -cGAGGUGGAcCGCUGGauccggcaCGCGGCCGg -3'
miRNA:   3'- ucUUUUACUUcGCGAUC--------GCGCCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.