miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1554 3' -55.2 NC_001347.2 + 197507 1.11 0.004266
Target:  5'- uCAUCGGCACCAUCGGACUCGCCAACCu -3'
miRNA:   3'- -GUAGCCGUGGUAGCCUGAGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 134328 0.78 0.434327
Target:  5'- aCAggCGGCgACCG-CGGACUCGCCucgGCCa -3'
miRNA:   3'- -GUa-GCCG-UGGUaGCCUGAGCGGu--UGG- -5'
1554 3' -55.2 NC_001347.2 + 203295 0.76 0.545261
Target:  5'- cCAUCuGuGCGCauggacuuUCGGGCUCGCCGGCCc -3'
miRNA:   3'- -GUAG-C-CGUGgu------AGCCUGAGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 19304 0.76 0.564737
Target:  5'- ---aGGCucccuacCCGUCGGAagaCUCGCCGACCa -3'
miRNA:   3'- guagCCGu------GGUAGCCU---GAGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 107134 0.75 0.594269
Target:  5'- -cUCGGgGCCGcgUGGACUCaCCAGCCg -3'
miRNA:   3'- guAGCCgUGGUa-GCCUGAGcGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 97146 0.74 0.633979
Target:  5'- --gCGGCAUCcUCGGGCUUuCCGGCCa -3'
miRNA:   3'- guaGCCGUGGuAGCCUGAGcGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 100191 0.74 0.66377
Target:  5'- --gCGGCGCCG-CGGcCUCGCCcagguAGCCg -3'
miRNA:   3'- guaGCCGUGGUaGCCuGAGCGG-----UUGG- -5'
1554 3' -55.2 NC_001347.2 + 41242 0.73 0.73206
Target:  5'- -uUCGGaACCAU-GGGC-CGCCAACCu -3'
miRNA:   3'- guAGCCgUGGUAgCCUGaGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 195187 0.72 0.750026
Target:  5'- --aCGGCguuuuugcuucucGCCGUUGGACUCGagcgCAACCg -3'
miRNA:   3'- guaGCCG-------------UGGUAGCCUGAGCg---GUUGG- -5'
1554 3' -55.2 NC_001347.2 + 166307 0.72 0.750962
Target:  5'- --aCGGCGCCAUUGGAacguugCGCCuGCUc -3'
miRNA:   3'- guaGCCGUGGUAGCCUga----GCGGuUGG- -5'
1554 3' -55.2 NC_001347.2 + 19181 0.72 0.787514
Target:  5'- --gCGGcCGCCccCGGAgaaUCGCCAACCg -3'
miRNA:   3'- guaGCC-GUGGuaGCCUg--AGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 149674 0.71 0.796343
Target:  5'- gAUCGGCACCugCGGGCagGUgGGCCc -3'
miRNA:   3'- gUAGCCGUGGuaGCCUGagCGgUUGG- -5'
1554 3' -55.2 NC_001347.2 + 197069 0.71 0.805031
Target:  5'- -cUCGGCGCUcUCGGACgccgagCugagcaaccacGCCAACCg -3'
miRNA:   3'- guAGCCGUGGuAGCCUGa-----G-----------CGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 192229 0.71 0.821957
Target:  5'- --aCGGUguauauaaACCgcGUCGGcCUCGCCGGCCc -3'
miRNA:   3'- guaGCCG--------UGG--UAGCCuGAGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 161034 0.71 0.821957
Target:  5'- aAUCGGUgACCAggugaaUGGGUUCGCCGGCCu -3'
miRNA:   3'- gUAGCCG-UGGUa-----GCCUGAGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 14011 0.7 0.851512
Target:  5'- cUAUCGGCggccggggcugugaACCGcucaguggcUCGGAC-CGCCGGCUg -3'
miRNA:   3'- -GUAGCCG--------------UGGU---------AGCCUGaGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 106204 0.7 0.8538
Target:  5'- -uUCGGa---AUCGGGCcCGCCGGCCa -3'
miRNA:   3'- guAGCCguggUAGCCUGaGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 187955 0.7 0.8538
Target:  5'- aGUCGGCGCaCAcguuuUUGGGCgcgCGCUcGCCg -3'
miRNA:   3'- gUAGCCGUG-GU-----AGCCUGa--GCGGuUGG- -5'
1554 3' -55.2 NC_001347.2 + 78379 0.7 0.8538
Target:  5'- --gCGGCGCCGUggugggaGGACcCGCgGGCCa -3'
miRNA:   3'- guaGCCGUGGUAg------CCUGaGCGgUUGG- -5'
1554 3' -55.2 NC_001347.2 + 172025 0.69 0.88931
Target:  5'- gUAUCGGUugCcgCGGcucuccaUCGCCAGCg -3'
miRNA:   3'- -GUAGCCGugGuaGCCug-----AGCGGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.