miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1554 3' -55.2 NC_001347.2 + 1342 0.67 0.944096
Target:  5'- gCGUgGGCGCgA-CGGACcugCGUCAACUg -3'
miRNA:   3'- -GUAgCCGUGgUaGCCUGa--GCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 1710 0.67 0.948344
Target:  5'- --aCGGCGC--UCGGACgggagcugCGCCGGCg -3'
miRNA:   3'- guaGCCGUGguAGCCUGa-------GCGGUUGg -5'
1554 3' -55.2 NC_001347.2 + 2222 0.66 0.97716
Target:  5'- --cCGGCGgCGUCGGggaccgugccGCgCGCCAugCu -3'
miRNA:   3'- guaGCCGUgGUAGCC----------UGaGCGGUugG- -5'
1554 3' -55.2 NC_001347.2 + 14011 0.7 0.851512
Target:  5'- cUAUCGGCggccggggcugugaACCGcucaguggcUCGGAC-CGCCGGCUg -3'
miRNA:   3'- -GUAGCCG--------------UGGU---------AGCCUGaGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 16496 0.68 0.939627
Target:  5'- -uUCGGCugCuugaCGGACU-GCUGGCCc -3'
miRNA:   3'- guAGCCGugGua--GCCUGAgCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 17036 0.66 0.97716
Target:  5'- uCcgCGGCgACUucgCGGAacgUCGUCGACCg -3'
miRNA:   3'- -GuaGCCG-UGGua-GCCUg--AGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 17124 0.66 0.972134
Target:  5'- gGUCGucCGCCGUCGGccGC-CGCCcauGCCa -3'
miRNA:   3'- gUAGCc-GUGGUAGCC--UGaGCGGu--UGG- -5'
1554 3' -55.2 NC_001347.2 + 19181 0.72 0.787514
Target:  5'- --gCGGcCGCCccCGGAgaaUCGCCAACCg -3'
miRNA:   3'- guaGCC-GUGGuaGCCUg--AGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 19304 0.76 0.564737
Target:  5'- ---aGGCucccuacCCGUCGGAagaCUCGCCGACCa -3'
miRNA:   3'- guagCCGu------GGUAGCCU---GAGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 24635 0.68 0.934933
Target:  5'- --cUGGUGCUAUU--ACUCGCCGGCCu -3'
miRNA:   3'- guaGCCGUGGUAGccUGAGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 25375 0.68 0.919502
Target:  5'- --aUGGCGCCGUgGGuuggcaGCUgGCCGGCUu -3'
miRNA:   3'- guaGCCGUGGUAgCC------UGAgCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 28104 0.66 0.976925
Target:  5'- --aCGGCACUGUCGuguuccaGACcagCGCCAccauaGCCa -3'
miRNA:   3'- guaGCCGUGGUAGC-------CUGa--GCGGU-----UGG- -5'
1554 3' -55.2 NC_001347.2 + 31674 0.68 0.930015
Target:  5'- gGUCGGC-UgGUCGGGCcgUCGCgGACg -3'
miRNA:   3'- gUAGCCGuGgUAGCCUG--AGCGgUUGg -5'
1554 3' -55.2 NC_001347.2 + 37613 0.66 0.969342
Target:  5'- ---gGGCGCCA--GGACUCGUCAucguAUCg -3'
miRNA:   3'- guagCCGUGGUagCCUGAGCGGU----UGG- -5'
1554 3' -55.2 NC_001347.2 + 38579 0.67 0.959782
Target:  5'- --gCGGCGCCGacgcgaacggcUCGuACUgCGCCAGCUc -3'
miRNA:   3'- guaGCCGUGGU-----------AGCcUGA-GCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 38727 0.68 0.919502
Target:  5'- -cUCGGCGCgCAgcaacgucugUCGGAg-CGCCGGCUg -3'
miRNA:   3'- guAGCCGUG-GU----------AGCCUgaGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 40505 0.66 0.972134
Target:  5'- uGUCGGCACCGggcuUCGGgACgguguuucggCGCgCuGCCg -3'
miRNA:   3'- gUAGCCGUGGU----AGCC-UGa---------GCG-GuUGG- -5'
1554 3' -55.2 NC_001347.2 + 41242 0.73 0.73206
Target:  5'- -uUCGGaACCAU-GGGC-CGCCAACCu -3'
miRNA:   3'- guAGCCgUGGUAgCCUGaGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 41279 0.66 0.97716
Target:  5'- uGUUGGCgcGCCAacgcgaCGGcCUCGCUGACUg -3'
miRNA:   3'- gUAGCCG--UGGUa-----GCCuGAGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 61962 0.66 0.974738
Target:  5'- cCAUCuaCGCCGUguacgGGACUCGCCugaacGCCa -3'
miRNA:   3'- -GUAGccGUGGUAg----CCUGAGCGGu----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.