Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1554 | 5' | -64.1 | NC_001347.2 | + | 197542 | 1.1 | 0.000856 |
Target: 5'- uGGGACCGCAGCGUGGCCGGCGUGGCGg -3' miRNA: 3'- -CCCUGGCGUCGCACCGGCCGCACCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 110353 | 0.76 | 0.200256 |
Target: 5'- aGGGCCGCuGCGUGGUgGGCGaacaggaccgacugcUGGUGg -3' miRNA: 3'- cCCUGGCGuCGCACCGgCCGC---------------ACCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 140575 | 0.74 | 0.248277 |
Target: 5'- cGGGCgGCGGUGcUGGCgGGgGUGGUGg -3' miRNA: 3'- cCCUGgCGUCGC-ACCGgCCgCACCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 1722 | 0.74 | 0.265127 |
Target: 5'- cGGGAgCUGCgccGGCGgugGGCCGGCacgacgGUGGCGc -3' miRNA: 3'- -CCCU-GGCG---UCGCa--CCGGCCG------CACCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 1948 | 0.73 | 0.282891 |
Target: 5'- uGGGCugCGCGGCGgGGCCGGCGacggggacGGCGg -3' miRNA: 3'- cCCUG--GCGUCGCaCCGGCCGCa-------CCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 180271 | 0.73 | 0.301585 |
Target: 5'- -cGACCGCAGCgGUGGCUGgagaagcgcaGCGUcGGCGa -3' miRNA: 3'- ccCUGGCGUCG-CACCGGC----------CGCA-CCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 113173 | 0.73 | 0.314569 |
Target: 5'- aGGGAaCGC-GCGccccagccGCCGGCGUGGCGg -3' miRNA: 3'- -CCCUgGCGuCGCac------CGGCCGCACCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 195291 | 0.71 | 0.378149 |
Target: 5'- cGGGCCGUAGCGU-GCUGgauaGCGUGaGCGg -3' miRNA: 3'- cCCUGGCGUCGCAcCGGC----CGCAC-CGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 184942 | 0.71 | 0.378149 |
Target: 5'- -cGuCUGCAGCucGUcGGCCGGCGUgGGCGg -3' miRNA: 3'- ccCuGGCGUCG--CA-CCGGCCGCA-CCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 141806 | 0.71 | 0.385726 |
Target: 5'- -aGACCGCAgGCGU-GCCGGCGcccaUGGCc -3' miRNA: 3'- ccCUGGCGU-CGCAcCGGCCGC----ACCGc -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 78356 | 0.71 | 0.40905 |
Target: 5'- cGGACC-CGGCGUGGUgGGacccggcggcgcCGUGGUGg -3' miRNA: 3'- cCCUGGcGUCGCACCGgCC------------GCACCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 187347 | 0.7 | 0.42508 |
Target: 5'- aGGugCGUuGCGUGGCCGuggcGCGUcGCGg -3' miRNA: 3'- cCCugGCGuCGCACCGGC----CGCAcCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 40394 | 0.7 | 0.433234 |
Target: 5'- --cGCCGguGCGgGGCC-GCGUGGUGg -3' miRNA: 3'- cccUGGCguCGCaCCGGcCGCACCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 192193 | 0.7 | 0.436521 |
Target: 5'- -cGGCCGCGGCGcgGGCuCGGCGUcccgccguccgagacGGUGu -3' miRNA: 3'- ccCUGGCGUCGCa-CCG-GCCGCA---------------CCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 140198 | 0.7 | 0.441479 |
Target: 5'- uGGGCCGCAGCauuUGGCguUGGUguGUGGCa -3' miRNA: 3'- cCCUGGCGUCGc--ACCG--GCCG--CACCGc -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 152438 | 0.7 | 0.446467 |
Target: 5'- aGGGGCCGCAGCcguugGUGGaaacuacgugcaaCGGCGacGCGg -3' miRNA: 3'- -CCCUGGCGUCG-----CACCg------------GCCGCacCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 44036 | 0.7 | 0.449811 |
Target: 5'- uGGcGACgGCAGCGguggUGGCgcugGGgGUGGCGg -3' miRNA: 3'- -CC-CUGgCGUCGC----ACCGg---CCgCACCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 38000 | 0.7 | 0.449811 |
Target: 5'- cGGGcagcaGCCGCcGCGcGGCCucGGCGgcgGGCGc -3' miRNA: 3'- -CCC-----UGGCGuCGCaCCGG--CCGCa--CCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 153239 | 0.7 | 0.449811 |
Target: 5'- cGGG-CGC-GCGUcGGCCGGCGacGGCGg -3' miRNA: 3'- cCCUgGCGuCGCA-CCGGCCGCa-CCGC- -5' |
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1554 | 5' | -64.1 | NC_001347.2 | + | 147903 | 0.7 | 0.459076 |
Target: 5'- uGGGGCCGUGG-GUGGCgCGGUGgccuccguggucgaaGGCGu -3' miRNA: 3'- -CCCUGGCGUCgCACCG-GCCGCa--------------CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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