miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1554 5' -64.1 NC_001347.2 + 42 0.67 0.639496
Target:  5'- uGGGugUGUcggGGCGcGGCCGG-GUGGg- -3'
miRNA:   3'- -CCCugGCG---UCGCaCCGGCCgCACCgc -5'
1554 5' -64.1 NC_001347.2 + 169 0.69 0.510393
Target:  5'- cGGGugUGUcgcgGGCGUGuggcggguguGCCGGCGggguguggUGGCGg -3'
miRNA:   3'- -CCCugGCG----UCGCAC----------CGGCCGC--------ACCGC- -5'
1554 5' -64.1 NC_001347.2 + 1722 0.74 0.265127
Target:  5'- cGGGAgCUGCgccGGCGgugGGCCGGCacgacgGUGGCGc -3'
miRNA:   3'- -CCCU-GGCG---UCGCa--CCGGCCG------CACCGC- -5'
1554 5' -64.1 NC_001347.2 + 1843 0.66 0.676875
Target:  5'- cGGcGCCGCAccccGCGUcgcugcugacGGCCGuGCGUcGGCa -3'
miRNA:   3'- -CCcUGGCGU----CGCA----------CCGGC-CGCA-CCGc -5'
1554 5' -64.1 NC_001347.2 + 1902 0.69 0.49271
Target:  5'- --uGCUGCGGC-UGGCUGGCGcugGGCGc -3'
miRNA:   3'- cccUGGCGUCGcACCGGCCGCa--CCGC- -5'
1554 5' -64.1 NC_001347.2 + 1948 0.73 0.282891
Target:  5'- uGGGCugCGCGGCGgGGCCGGCGacggggacGGCGg -3'
miRNA:   3'- cCCUG--GCGUCGCaCCGGCCGCa-------CCGC- -5'
1554 5' -64.1 NC_001347.2 + 2094 0.66 0.676875
Target:  5'- --aGCCGUacGGCGccGCCGGCGggGGCGc -3'
miRNA:   3'- cccUGGCG--UCGCacCGGCCGCa-CCGC- -5'
1554 5' -64.1 NC_001347.2 + 2199 0.67 0.611388
Target:  5'- uGGGuuCGaCAGCGaUGGCgGGUccGGCGg -3'
miRNA:   3'- -CCCugGC-GUCGC-ACCGgCCGcaCCGC- -5'
1554 5' -64.1 NC_001347.2 + 7803 0.66 0.648864
Target:  5'- uGGGuACCGUcacuagugacguGGCGUGacgaaGCUGGUacgGUGGCGg -3'
miRNA:   3'- -CCC-UGGCG------------UCGCAC-----CGGCCG---CACCGC- -5'
1554 5' -64.1 NC_001347.2 + 13923 0.68 0.559344
Target:  5'- gGGGcgucggagaguauaaACUGgGGCG-GGCgCGGgGUGGCGa -3'
miRNA:   3'- -CCC---------------UGGCgUCGCaCCG-GCCgCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 31103 0.67 0.630123
Target:  5'- --aACCGgAGCGUgcuccauugccGGCCGGCGUccaGGCu -3'
miRNA:   3'- cccUGGCgUCGCA-----------CCGGCCGCA---CCGc -5'
1554 5' -64.1 NC_001347.2 + 38000 0.7 0.449811
Target:  5'- cGGGcagcaGCCGCcGCGcGGCCucGGCGgcgGGCGc -3'
miRNA:   3'- -CCC-----UGGCGuCGCaCCGG--CCGCa--CCGC- -5'
1554 5' -64.1 NC_001347.2 + 40121 0.68 0.555667
Target:  5'- gGGGACCGCGGgGgaaauaacGGCC-GCGaGGCc -3'
miRNA:   3'- -CCCUGGCGUCgCa-------CCGGcCGCaCCGc -5'
1554 5' -64.1 NC_001347.2 + 40394 0.7 0.433234
Target:  5'- --cGCCGguGCGgGGCC-GCGUGGUGg -3'
miRNA:   3'- cccUGGCguCGCaCCGGcCGCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 44036 0.7 0.449811
Target:  5'- uGGcGACgGCAGCGguggUGGCgcugGGgGUGGCGg -3'
miRNA:   3'- -CC-CUGgCGUCGC----ACCGg---CCgCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 75406 0.69 0.510393
Target:  5'- cGGGAgCgGCGGcCGUGG-CGGCGgcagcGGCGc -3'
miRNA:   3'- -CCCU-GgCGUC-GCACCgGCCGCa----CCGC- -5'
1554 5' -64.1 NC_001347.2 + 77318 0.68 0.537395
Target:  5'- uGGGCCGCGGCGUGGauGaCGaGGCc -3'
miRNA:   3'- cCCUGGCGUCGCACCggCcGCaCCGc -5'
1554 5' -64.1 NC_001347.2 + 77863 0.67 0.611388
Target:  5'- --uGCUGCAG-GUGGCCGaGCGccugGGCGc -3'
miRNA:   3'- cccUGGCGUCgCACCGGC-CGCa---CCGC- -5'
1554 5' -64.1 NC_001347.2 + 78356 0.71 0.40905
Target:  5'- cGGACC-CGGCGUGGUgGGacccggcggcgcCGUGGUGg -3'
miRNA:   3'- cCCUGGcGUCGCACCGgCC------------GCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 89527 0.7 0.466731
Target:  5'- aGGugCGCGaCGaGGCCGGCcaGGCGg -3'
miRNA:   3'- cCCugGCGUcGCaCCGGCCGcaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.