miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1554 5' -64.1 NC_001347.2 + 197542 1.1 0.000856
Target:  5'- uGGGACCGCAGCGUGGCCGGCGUGGCGg -3'
miRNA:   3'- -CCCUGGCGUCGCACCGGCCGCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 110353 0.76 0.200256
Target:  5'- aGGGCCGCuGCGUGGUgGGCGaacaggaccgacugcUGGUGg -3'
miRNA:   3'- cCCUGGCGuCGCACCGgCCGC---------------ACCGC- -5'
1554 5' -64.1 NC_001347.2 + 140575 0.74 0.248277
Target:  5'- cGGGCgGCGGUGcUGGCgGGgGUGGUGg -3'
miRNA:   3'- cCCUGgCGUCGC-ACCGgCCgCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 1722 0.74 0.265127
Target:  5'- cGGGAgCUGCgccGGCGgugGGCCGGCacgacgGUGGCGc -3'
miRNA:   3'- -CCCU-GGCG---UCGCa--CCGGCCG------CACCGC- -5'
1554 5' -64.1 NC_001347.2 + 1948 0.73 0.282891
Target:  5'- uGGGCugCGCGGCGgGGCCGGCGacggggacGGCGg -3'
miRNA:   3'- cCCUG--GCGUCGCaCCGGCCGCa-------CCGC- -5'
1554 5' -64.1 NC_001347.2 + 180271 0.73 0.301585
Target:  5'- -cGACCGCAGCgGUGGCUGgagaagcgcaGCGUcGGCGa -3'
miRNA:   3'- ccCUGGCGUCG-CACCGGC----------CGCA-CCGC- -5'
1554 5' -64.1 NC_001347.2 + 113173 0.73 0.314569
Target:  5'- aGGGAaCGC-GCGccccagccGCCGGCGUGGCGg -3'
miRNA:   3'- -CCCUgGCGuCGCac------CGGCCGCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 195291 0.71 0.378149
Target:  5'- cGGGCCGUAGCGU-GCUGgauaGCGUGaGCGg -3'
miRNA:   3'- cCCUGGCGUCGCAcCGGC----CGCAC-CGC- -5'
1554 5' -64.1 NC_001347.2 + 184942 0.71 0.378149
Target:  5'- -cGuCUGCAGCucGUcGGCCGGCGUgGGCGg -3'
miRNA:   3'- ccCuGGCGUCG--CA-CCGGCCGCA-CCGC- -5'
1554 5' -64.1 NC_001347.2 + 141806 0.71 0.385726
Target:  5'- -aGACCGCAgGCGU-GCCGGCGcccaUGGCc -3'
miRNA:   3'- ccCUGGCGU-CGCAcCGGCCGC----ACCGc -5'
1554 5' -64.1 NC_001347.2 + 78356 0.71 0.40905
Target:  5'- cGGACC-CGGCGUGGUgGGacccggcggcgcCGUGGUGg -3'
miRNA:   3'- cCCUGGcGUCGCACCGgCC------------GCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 187347 0.7 0.42508
Target:  5'- aGGugCGUuGCGUGGCCGuggcGCGUcGCGg -3'
miRNA:   3'- cCCugGCGuCGCACCGGC----CGCAcCGC- -5'
1554 5' -64.1 NC_001347.2 + 40394 0.7 0.433234
Target:  5'- --cGCCGguGCGgGGCC-GCGUGGUGg -3'
miRNA:   3'- cccUGGCguCGCaCCGGcCGCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 192193 0.7 0.436521
Target:  5'- -cGGCCGCGGCGcgGGCuCGGCGUcccgccguccgagacGGUGu -3'
miRNA:   3'- ccCUGGCGUCGCa-CCG-GCCGCA---------------CCGC- -5'
1554 5' -64.1 NC_001347.2 + 140198 0.7 0.441479
Target:  5'- uGGGCCGCAGCauuUGGCguUGGUguGUGGCa -3'
miRNA:   3'- cCCUGGCGUCGc--ACCG--GCCG--CACCGc -5'
1554 5' -64.1 NC_001347.2 + 152438 0.7 0.446467
Target:  5'- aGGGGCCGCAGCcguugGUGGaaacuacgugcaaCGGCGacGCGg -3'
miRNA:   3'- -CCCUGGCGUCG-----CACCg------------GCCGCacCGC- -5'
1554 5' -64.1 NC_001347.2 + 44036 0.7 0.449811
Target:  5'- uGGcGACgGCAGCGguggUGGCgcugGGgGUGGCGg -3'
miRNA:   3'- -CC-CUGgCGUCGC----ACCGg---CCgCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 38000 0.7 0.449811
Target:  5'- cGGGcagcaGCCGCcGCGcGGCCucGGCGgcgGGCGc -3'
miRNA:   3'- -CCC-----UGGCGuCGCaCCGG--CCGCa--CCGC- -5'
1554 5' -64.1 NC_001347.2 + 153239 0.7 0.449811
Target:  5'- cGGG-CGC-GCGUcGGCCGGCGacGGCGg -3'
miRNA:   3'- cCCUgGCGuCGCA-CCGGCCGCa-CCGC- -5'
1554 5' -64.1 NC_001347.2 + 147903 0.7 0.459076
Target:  5'- uGGGGCCGUGG-GUGGCgCGGUGgccuccguggucgaaGGCGu -3'
miRNA:   3'- -CCCUGGCGUCgCACCG-GCCGCa--------------CCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.