miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1554 5' -64.1 NC_001347.2 + 89527 0.7 0.466731
Target:  5'- aGGugCGCGaCGaGGCCGGCcaGGCGg -3'
miRNA:   3'- cCCugGCGUcGCaCCGGCCGcaCCGC- -5'
1554 5' -64.1 NC_001347.2 + 148621 0.69 0.475314
Target:  5'- cGG-UCGCGG-GUGGCCGGCGUcaGCGu -3'
miRNA:   3'- cCCuGGCGUCgCACCGGCCGCAc-CGC- -5'
1554 5' -64.1 NC_001347.2 + 1902 0.69 0.49271
Target:  5'- --uGCUGCGGC-UGGCUGGCGcugGGCGc -3'
miRNA:   3'- cccUGGCGUCGcACCGGCCGCa--CCGC- -5'
1554 5' -64.1 NC_001347.2 + 229648 0.69 0.510393
Target:  5'- cGGGugUGUcgcgGGCGUGuggcggguguGCCGGCGggguguggUGGCGg -3'
miRNA:   3'- -CCCugGCG----UCGCAC----------CGGCCGC--------ACCGC- -5'
1554 5' -64.1 NC_001347.2 + 169 0.69 0.510393
Target:  5'- cGGGugUGUcgcgGGCGUGuggcggguguGCCGGCGggguguggUGGCGg -3'
miRNA:   3'- -CCCugGCG----UCGCAC----------CGGCCGC--------ACCGC- -5'
1554 5' -64.1 NC_001347.2 + 75406 0.69 0.510393
Target:  5'- cGGGAgCgGCGGcCGUGG-CGGCGgcagcGGCGc -3'
miRNA:   3'- -CCCU-GgCGUC-GCACCgGCCGCa----CCGC- -5'
1554 5' -64.1 NC_001347.2 + 142581 0.69 0.519334
Target:  5'- cGGGA--GCAGCGgGGgCGGCGggGGCa -3'
miRNA:   3'- -CCCUggCGUCGCaCCgGCCGCa-CCGc -5'
1554 5' -64.1 NC_001347.2 + 77318 0.68 0.537395
Target:  5'- uGGGCCGCGGCGUGGauGaCGaGGCc -3'
miRNA:   3'- cCCUGGCGUCGCACCggCcGCaCCGc -5'
1554 5' -64.1 NC_001347.2 + 136171 0.68 0.542856
Target:  5'- cGGACCGCAGCacGGCCGgaacccugccGCGgacugcgccggggGGCGg -3'
miRNA:   3'- cCCUGGCGUCGcaCCGGC----------CGCa------------CCGC- -5'
1554 5' -64.1 NC_001347.2 + 229531 0.68 0.546507
Target:  5'- cGGGG-CGCGGCG-GGUgGGUGUGuGCc -3'
miRNA:   3'- -CCCUgGCGUCGCaCCGgCCGCAC-CGc -5'
1554 5' -64.1 NC_001347.2 + 173520 0.68 0.555667
Target:  5'- cGGGaacaGCgGCAagucGCGUGGCggCGGCgGUGGUGg -3'
miRNA:   3'- -CCC----UGgCGU----CGCACCG--GCCG-CACCGC- -5'
1554 5' -64.1 NC_001347.2 + 40121 0.68 0.555667
Target:  5'- gGGGACCGCGGgGgaaauaacGGCC-GCGaGGCc -3'
miRNA:   3'- -CCCUGGCGUCgCa-------CCGGcCGCaCCGc -5'
1554 5' -64.1 NC_001347.2 + 13923 0.68 0.559344
Target:  5'- gGGGcgucggagaguauaaACUGgGGCG-GGCgCGGgGUGGCGa -3'
miRNA:   3'- -CCC---------------UGGCgUCGCaCCG-GCCgCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 190143 0.68 0.574117
Target:  5'- cGGGGCCGCAaccGgGUucuGCCGGCaUGGgGg -3'
miRNA:   3'- -CCCUGGCGU---CgCAc--CGGCCGcACCgC- -5'
1554 5' -64.1 NC_001347.2 + 104337 0.68 0.582466
Target:  5'- uGGACCGCuggauccGGCacgcGGCCGGCGUagaacGGCc -3'
miRNA:   3'- cCCUGGCG-------UCGca--CCGGCCGCA-----CCGc -5'
1554 5' -64.1 NC_001347.2 + 117898 0.68 0.583395
Target:  5'- cGGGGCgGCGGCG-GGuCCcGUGaUGGCa -3'
miRNA:   3'- -CCCUGgCGUCGCaCC-GGcCGC-ACCGc -5'
1554 5' -64.1 NC_001347.2 + 138223 0.67 0.592704
Target:  5'- gGGGugUGUAGCuUGuaCGGCGUuuugucGGCGg -3'
miRNA:   3'- -CCCugGCGUCGcACcgGCCGCA------CCGC- -5'
1554 5' -64.1 NC_001347.2 + 138815 0.67 0.602036
Target:  5'- -aGACCGCAGUgGUGGCCacgGUGGUGu -3'
miRNA:   3'- ccCUGGCGUCG-CACCGGccgCACCGC- -5'
1554 5' -64.1 NC_001347.2 + 2199 0.67 0.611388
Target:  5'- uGGGuuCGaCAGCGaUGGCgGGUccGGCGg -3'
miRNA:   3'- -CCCugGC-GUCGC-ACCGgCCGcaCCGC- -5'
1554 5' -64.1 NC_001347.2 + 77863 0.67 0.611388
Target:  5'- --uGCUGCAG-GUGGCCGaGCGccugGGCGc -3'
miRNA:   3'- cccUGGCGUCgCACCGGC-CGCa---CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.