miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1555 3' -52.9 NC_001347.2 + 197212 1.11 0.007692
Target:  5'- aUGUACGCCGUUUUCGGCCUCACGAGGu -3'
miRNA:   3'- -ACAUGCGGCAAAAGCCGGAGUGCUCC- -5'
1555 3' -52.9 NC_001347.2 + 112432 0.77 0.633111
Target:  5'- cGUGCccgGCCGUgcUCGGCCUCGCcuGGGa -3'
miRNA:   3'- aCAUG---CGGCAaaAGCCGGAGUGc-UCC- -5'
1555 3' -52.9 NC_001347.2 + 156823 0.75 0.723607
Target:  5'- --gACGUCGgaggguccgcgcgUCGGCCUCugGAGGa -3'
miRNA:   3'- acaUGCGGCaaa----------AGCCGGAGugCUCC- -5'
1555 3' -52.9 NC_001347.2 + 157148 0.74 0.814674
Target:  5'- -cUGCGCCGUcucUUCGcGCCccucugcguUCACGAGGa -3'
miRNA:   3'- acAUGCGGCAa--AAGC-CGG---------AGUGCUCC- -5'
1555 3' -52.9 NC_001347.2 + 74179 0.72 0.877266
Target:  5'- gGUACcacCCGUcgacugUCaGCCUCGCGAGGa -3'
miRNA:   3'- aCAUGc--GGCAaa----AGcCGGAGUGCUCC- -5'
1555 3' -52.9 NC_001347.2 + 18552 0.72 0.897413
Target:  5'- gGUACGUCG---UCGGCCUCGUGGGc -3'
miRNA:   3'- aCAUGCGGCaaaAGCCGGAGUGCUCc -5'
1555 3' -52.9 NC_001347.2 + 199628 0.71 0.909736
Target:  5'- --gGCGCCGUUcUCGGgCa-GCGAGGg -3'
miRNA:   3'- acaUGCGGCAAaAGCCgGagUGCUCC- -5'
1555 3' -52.9 NC_001347.2 + 170611 0.7 0.936538
Target:  5'- gGUGCGCCGUUUugugCuGCgUCACaugGAGGa -3'
miRNA:   3'- aCAUGCGGCAAAa---GcCGgAGUG---CUCC- -5'
1555 3' -52.9 NC_001347.2 + 222151 0.7 0.945648
Target:  5'- gGUGCGCCGcgUcUUGGCCUgCAUGAu- -3'
miRNA:   3'- aCAUGCGGCa-AaAGCCGGA-GUGCUcc -5'
1555 3' -52.9 NC_001347.2 + 94805 0.69 0.957626
Target:  5'- cGUaACGCCGg---CGuGCgUCAUGAGGu -3'
miRNA:   3'- aCA-UGCGGCaaaaGC-CGgAGUGCUCC- -5'
1555 3' -52.9 NC_001347.2 + 128236 0.69 0.964523
Target:  5'- --gACGCCG----CGGUCUCACcGAGGu -3'
miRNA:   3'- acaUGCGGCaaaaGCCGGAGUG-CUCC- -5'
1555 3' -52.9 NC_001347.2 + 183472 0.69 0.967659
Target:  5'- --cGCGCC----UCGGCCUCGgGAGa -3'
miRNA:   3'- acaUGCGGcaaaAGCCGGAGUgCUCc -5'
1555 3' -52.9 NC_001347.2 + 172157 0.69 0.967659
Target:  5'- cGUgACGCCGUcagugUgGGCUUCGCGcGGc -3'
miRNA:   3'- aCA-UGCGGCAaa---AgCCGGAGUGCuCC- -5'
1555 3' -52.9 NC_001347.2 + 39344 0.69 0.967659
Target:  5'- --gGCGCCcgg--CGGCC-CGCGGGGu -3'
miRNA:   3'- acaUGCGGcaaaaGCCGGaGUGCUCC- -5'
1555 3' -52.9 NC_001347.2 + 1211 0.68 0.970593
Target:  5'- --cGCGgCGUUUUUGGCCaacagCACGGGc -3'
miRNA:   3'- acaUGCgGCAAAAGCCGGa----GUGCUCc -5'
1555 3' -52.9 NC_001347.2 + 1728 0.68 0.970593
Target:  5'- -cUGCGCCGgcggUgGGCCggCACGAcGGu -3'
miRNA:   3'- acAUGCGGCaaa-AgCCGGa-GUGCU-CC- -5'
1555 3' -52.9 NC_001347.2 + 84619 0.68 0.973331
Target:  5'- ---cCGUCGUgggUGGCCUCGCGGuGGc -3'
miRNA:   3'- acauGCGGCAaaaGCCGGAGUGCU-CC- -5'
1555 3' -52.9 NC_001347.2 + 87145 0.68 0.97588
Target:  5'- --aACGCCGUa---GGCCggcUACGGGGa -3'
miRNA:   3'- acaUGCGGCAaaagCCGGa--GUGCUCC- -5'
1555 3' -52.9 NC_001347.2 + 136104 0.68 0.97588
Target:  5'- --gGCGCCGggccUCGGCCg-GgGAGGg -3'
miRNA:   3'- acaUGCGGCaaa-AGCCGGagUgCUCC- -5'
1555 3' -52.9 NC_001347.2 + 173075 0.68 0.97588
Target:  5'- uUGUGCGCgaaagCGagaaUUCGGCCgugCACGuGGa -3'
miRNA:   3'- -ACAUGCG-----GCaa--AAGCCGGa--GUGCuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.