miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1555 3' -52.9 NC_001347.2 + 1211 0.68 0.970593
Target:  5'- --cGCGgCGUUUUUGGCCaacagCACGGGc -3'
miRNA:   3'- acaUGCgGCAAAAGCCGGa----GUGCUCc -5'
1555 3' -52.9 NC_001347.2 + 1728 0.68 0.970593
Target:  5'- -cUGCGCCGgcggUgGGCCggCACGAcGGu -3'
miRNA:   3'- acAUGCGGCaaa-AgCCGGa-GUGCU-CC- -5'
1555 3' -52.9 NC_001347.2 + 18552 0.72 0.897413
Target:  5'- gGUACGUCG---UCGGCCUCGUGGGc -3'
miRNA:   3'- aCAUGCGGCaaaAGCCGGAGUGCUCc -5'
1555 3' -52.9 NC_001347.2 + 20430 0.67 0.990297
Target:  5'- gGUGCGCCGcag-CGGCUUUgugcCGAGa -3'
miRNA:   3'- aCAUGCGGCaaaaGCCGGAGu---GCUCc -5'
1555 3' -52.9 NC_001347.2 + 39344 0.69 0.967659
Target:  5'- --gGCGCCcgg--CGGCC-CGCGGGGu -3'
miRNA:   3'- acaUGCGGcaaaaGCCGGaGUGCUCC- -5'
1555 3' -52.9 NC_001347.2 + 63229 0.66 0.992522
Target:  5'- --gACGCUGUUUacgcCGGCCUC-CGcGGc -3'
miRNA:   3'- acaUGCGGCAAAa---GCCGGAGuGCuCC- -5'
1555 3' -52.9 NC_001347.2 + 74179 0.72 0.877266
Target:  5'- gGUACcacCCGUcgacugUCaGCCUCGCGAGGa -3'
miRNA:   3'- aCAUGc--GGCAaa----AGcCGGAGUGCUCC- -5'
1555 3' -52.9 NC_001347.2 + 78035 0.67 0.990297
Target:  5'- --cACGCCGg---UGGCacaccugCACGAGGa -3'
miRNA:   3'- acaUGCGGCaaaaGCCGga-----GUGCUCC- -5'
1555 3' -52.9 NC_001347.2 + 84619 0.68 0.973331
Target:  5'- ---cCGUCGUgggUGGCCUCGCGGuGGc -3'
miRNA:   3'- acauGCGGCAaaaGCCGGAGUGCU-CC- -5'
1555 3' -52.9 NC_001347.2 + 87145 0.68 0.97588
Target:  5'- --aACGCCGUa---GGCCggcUACGGGGa -3'
miRNA:   3'- acaUGCGGCAaaagCCGGa--GUGCUCC- -5'
1555 3' -52.9 NC_001347.2 + 94805 0.69 0.957626
Target:  5'- cGUaACGCCGg---CGuGCgUCAUGAGGu -3'
miRNA:   3'- aCA-UGCGGCaaaaGC-CGgAGUGCUCC- -5'
1555 3' -52.9 NC_001347.2 + 94863 0.66 0.995079
Target:  5'- aUGUugACGUCGUccagugCGGCCUCcuCGAuGGg -3'
miRNA:   3'- -ACA--UGCGGCAaaa---GCCGGAGu-GCU-CC- -5'
1555 3' -52.9 NC_001347.2 + 100193 0.66 0.995079
Target:  5'- --gGCGCCG----CGGCCUCGCccAGGu -3'
miRNA:   3'- acaUGCGGCaaaaGCCGGAGUGc-UCC- -5'
1555 3' -52.9 NC_001347.2 + 112432 0.77 0.633111
Target:  5'- cGUGCccgGCCGUgcUCGGCCUCGCcuGGGa -3'
miRNA:   3'- aCAUG---CGGCAaaAGCCGGAGUGc-UCC- -5'
1555 3' -52.9 NC_001347.2 + 128236 0.69 0.964523
Target:  5'- --gACGCCG----CGGUCUCACcGAGGu -3'
miRNA:   3'- acaUGCGGCaaaaGCCGGAGUG-CUCC- -5'
1555 3' -52.9 NC_001347.2 + 136104 0.68 0.97588
Target:  5'- --gGCGCCGggccUCGGCCg-GgGAGGg -3'
miRNA:   3'- acaUGCGGCaaa-AGCCGGagUgCUCC- -5'
1555 3' -52.9 NC_001347.2 + 138701 0.66 0.993471
Target:  5'- gGUGCGUCGgcuagCGGUCUggUGCGAGa -3'
miRNA:   3'- aCAUGCGGCaaaa-GCCGGA--GUGCUCc -5'
1555 3' -52.9 NC_001347.2 + 143668 0.67 0.986023
Target:  5'- --gGCGCCGga---GGCCggcCugGAGGu -3'
miRNA:   3'- acaUGCGGCaaaagCCGGa--GugCUCC- -5'
1555 3' -52.9 NC_001347.2 + 156823 0.75 0.723607
Target:  5'- --gACGUCGgaggguccgcgcgUCGGCCUCugGAGGa -3'
miRNA:   3'- acaUGCGGCaaa----------AGCCGGAGugCUCC- -5'
1555 3' -52.9 NC_001347.2 + 157148 0.74 0.814674
Target:  5'- -cUGCGCCGUcucUUCGcGCCccucugcguUCACGAGGa -3'
miRNA:   3'- acAUGCGGCAa--AAGC-CGG---------AGUGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.