miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1555 5' -61.4 NC_001347.2 + 47071 0.66 0.746258
Target:  5'- uGCUAC----AGCUGCGGCGGCGa-- -3'
miRNA:   3'- gCGGUGuacuUCGGCGCCGCCGCgca -5'
1555 5' -61.4 NC_001347.2 + 47136 0.67 0.690283
Target:  5'- gGCgGCAau-GGCCGCGGCaGCGgGg -3'
miRNA:   3'- gCGgUGUacuUCGGCGCCGcCGCgCa -5'
1555 5' -61.4 NC_001347.2 + 53739 0.68 0.68076
Target:  5'- aGCCGCGU---GCCGCGG-GuGCGCGc -3'
miRNA:   3'- gCGGUGUAcuuCGGCGCCgC-CGCGCa -5'
1555 5' -61.4 NC_001347.2 + 56239 0.72 0.430596
Target:  5'- uGCCGCAcaAGGCCGUGGCGGUaGgGUa -3'
miRNA:   3'- gCGGUGUacUUCGGCGCCGCCG-CgCA- -5'
1555 5' -61.4 NC_001347.2 + 59065 0.71 0.500607
Target:  5'- aGCCAcCAUGGGcGCgGCGGUuuugguGGCGCGg -3'
miRNA:   3'- gCGGU-GUACUU-CGgCGCCG------CCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 59122 0.69 0.613503
Target:  5'- gGCCAUca-GAGCaGCGGCGGgGCGa -3'
miRNA:   3'- gCGGUGuacUUCGgCGCCGCCgCGCa -5'
1555 5' -61.4 NC_001347.2 + 63810 0.77 0.221317
Target:  5'- uGCCcaccuCAUGAAGCgGCGGCGGCGaUGg -3'
miRNA:   3'- gCGGu----GUACUUCGgCGCCGCCGC-GCa -5'
1555 5' -61.4 NC_001347.2 + 66505 0.68 0.632756
Target:  5'- aCGCCGCGaucGAGGCgGCGGCGauCGCa- -3'
miRNA:   3'- -GCGGUGUa--CUUCGgCGCCGCc-GCGca -5'
1555 5' -61.4 NC_001347.2 + 66783 0.67 0.718565
Target:  5'- cCGCCcgACGgugGuGGCgGCGGCGGCaGUGg -3'
miRNA:   3'- -GCGG--UGUa--CuUCGgCGCCGCCG-CGCa -5'
1555 5' -61.4 NC_001347.2 + 66835 0.72 0.439038
Target:  5'- aGUUAC-UGGcAGCCGCGGCGGUgGCGa -3'
miRNA:   3'- gCGGUGuACU-UCGGCGCCGCCG-CGCa -5'
1555 5' -61.4 NC_001347.2 + 67024 0.68 0.68076
Target:  5'- gGCUGCG-GAgacAGCUGCGGCGGUccucGCGa -3'
miRNA:   3'- gCGGUGUaCU---UCGGCGCCGCCG----CGCa -5'
1555 5' -61.4 NC_001347.2 + 71645 0.67 0.727872
Target:  5'- cCGCUACGcauccguGGCCGCGGCcGGCGg-- -3'
miRNA:   3'- -GCGGUGUacu----UCGGCGCCG-CCGCgca -5'
1555 5' -61.4 NC_001347.2 + 74727 0.66 0.781036
Target:  5'- gCGCgAaGUGAGGCCGUaguccacGGUGGUGCa- -3'
miRNA:   3'- -GCGgUgUACUUCGGCG-------CCGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 75396 0.67 0.727872
Target:  5'- cCGCUccaaGCggGAgcggcGGCCGUGGCGGCgGCa- -3'
miRNA:   3'- -GCGG----UGuaCU-----UCGGCGCCGCCG-CGca -5'
1555 5' -61.4 NC_001347.2 + 76633 0.71 0.482603
Target:  5'- gGCCGCGgcgGAGGCCGaaGCGGCcuuGCGc -3'
miRNA:   3'- gCGGUGUa--CUUCGGCgcCGCCG---CGCa -5'
1555 5' -61.4 NC_001347.2 + 78426 0.71 0.491567
Target:  5'- cCGCCACcc--GGCC-CGGCGGCGCc- -3'
miRNA:   3'- -GCGGUGuacuUCGGcGCCGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 78661 0.66 0.746258
Target:  5'- uGCC-CGUguugGAGGCCGUGcGCaaGGCGCGc -3'
miRNA:   3'- gCGGuGUA----CUUCGGCGC-CG--CCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 79049 0.71 0.50972
Target:  5'- aGCCGCGaGAAGgCGCGuCGGCGCc- -3'
miRNA:   3'- gCGGUGUaCUUCgGCGCcGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 80748 0.73 0.359147
Target:  5'- aGCCACcuaacGCCGCgGGCGGCGUGg -3'
miRNA:   3'- gCGGUGuacuuCGGCG-CCGCCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 81592 0.66 0.767848
Target:  5'- uCGCCGCcgGccggucgcucgcgaaAAGCCGUGGCauugagacgcacGGCGCc- -3'
miRNA:   3'- -GCGGUGuaC---------------UUCGGCGCCG------------CCGCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.