miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1555 5' -61.4 NC_001347.2 + 694 0.69 0.603892
Target:  5'- gGCCuuccagacuGCGUGgcGCCaaGGCGGCGCc- -3'
miRNA:   3'- gCGG---------UGUACuuCGGcgCCGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 763 0.67 0.690283
Target:  5'- aGCUGCGUGucGcCCGCGGCacacgGGCGaCGa -3'
miRNA:   3'- gCGGUGUACuuC-GGCGCCG-----CCGC-GCa -5'
1555 5' -61.4 NC_001347.2 + 1950 0.66 0.790539
Target:  5'- gGCUGCGcggcGggGCCGgcgacggggaCGGCGGCGgGg -3'
miRNA:   3'- gCGGUGUa---CuuCGGC----------GCCGCCGCgCa -5'
1555 5' -61.4 NC_001347.2 + 2010 0.68 0.632756
Target:  5'- gCGgCACGgagacgGAGGCCGcCGGCGGggaCGCGc -3'
miRNA:   3'- -GCgGUGUa-----CUUCGGC-GCCGCC---GCGCa -5'
1555 5' -61.4 NC_001347.2 + 2094 0.67 0.737105
Target:  5'- aGCCGUAcGgcGCCGcCGGCgggGGCGCGa -3'
miRNA:   3'- gCGGUGUaCuuCGGC-GCCG---CCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 2144 0.67 0.690283
Target:  5'- gCGCaCGCGgu-GGUCGgGGCGGaCGCGg -3'
miRNA:   3'- -GCG-GUGUacuUCGGCgCCGCC-GCGCa -5'
1555 5' -61.4 NC_001347.2 + 2397 0.73 0.397807
Target:  5'- cCGCCGCc-GAGGCCgcGCGGCGGCuGCu- -3'
miRNA:   3'- -GCGGUGuaCUUCGG--CGCCGCCG-CGca -5'
1555 5' -61.4 NC_001347.2 + 5780 0.67 0.690283
Target:  5'- cCGCCGCAucUGucGCCGCcaauuGGCGGCccucCGUu -3'
miRNA:   3'- -GCGGUGU--ACuuCGGCG-----CCGCCGc---GCA- -5'
1555 5' -61.4 NC_001347.2 + 7821 0.66 0.781906
Target:  5'- aCGUgGCGUGAcgaAGCUGguaCGGUGGCgGCGg -3'
miRNA:   3'- -GCGgUGUACU---UCGGC---GCCGCCG-CGCa -5'
1555 5' -61.4 NC_001347.2 + 14295 0.66 0.781906
Target:  5'- uGCCGCcgGAGcuccccgcgcuGCCuGUGGCGGC-CGa -3'
miRNA:   3'- gCGGUGuaCUU-----------CGG-CGCCGCCGcGCa -5'
1555 5' -61.4 NC_001347.2 + 16852 0.7 0.516141
Target:  5'- aCGCaACG-GAGGCUGCguacacaugggcgaGGCGGCGCGUc -3'
miRNA:   3'- -GCGgUGUaCUUCGGCG--------------CCGCCGCGCA- -5'
1555 5' -61.4 NC_001347.2 + 19105 0.66 0.749895
Target:  5'- cCGCC-CAUGu-GCCGCGuuccguacaacgaauGCGGCGuCGa -3'
miRNA:   3'- -GCGGuGUACuuCGGCGC---------------CGCCGC-GCa -5'
1555 5' -61.4 NC_001347.2 + 25353 0.66 0.755322
Target:  5'- uGCCGCGUGgcGCUGCacaccuauGGCGcCGUGg -3'
miRNA:   3'- gCGGUGUACuuCGGCG--------CCGCcGCGCa -5'
1555 5' -61.4 NC_001347.2 + 31383 0.73 0.382025
Target:  5'- aGCCGcCAUGAGGCgGUGGCuGCGCc- -3'
miRNA:   3'- gCGGU-GUACUUCGgCGCCGcCGCGca -5'
1555 5' -61.4 NC_001347.2 + 36415 0.73 0.374292
Target:  5'- uGCUGuuuucCGUGuuGCCGaCGGCGGCGCGg -3'
miRNA:   3'- gCGGU-----GUACuuCGGC-GCCGCCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 38010 0.7 0.565693
Target:  5'- cCGCCGCGc--GGCCuCGGCGGCGgGc -3'
miRNA:   3'- -GCGGUGUacuUCGGcGCCGCCGCgCa -5'
1555 5' -61.4 NC_001347.2 + 38243 0.67 0.712949
Target:  5'- gCGCCGCugcUGcuGCCGCGuccgccccgaccaccGCGuGCGCGUc -3'
miRNA:   3'- -GCGGUGu--ACuuCGGCGC---------------CGC-CGCGCA- -5'
1555 5' -61.4 NC_001347.2 + 38414 0.7 0.518902
Target:  5'- uGCCGCuc---GCCGCuGGCGGCGaCGUc -3'
miRNA:   3'- gCGGUGuacuuCGGCG-CCGCCGC-GCA- -5'
1555 5' -61.4 NC_001347.2 + 39753 0.71 0.473718
Target:  5'- aGCUACccgaagGAAGaCgCGCGGCaGGCGCGUa -3'
miRNA:   3'- gCGGUGua----CUUC-G-GCGCCG-CCGCGCA- -5'
1555 5' -61.4 NC_001347.2 + 41156 0.69 0.623127
Target:  5'- -cCCGCGcgGAAauccGCCGCGGCGGUgGCGa -3'
miRNA:   3'- gcGGUGUa-CUU----CGGCGCCGCCG-CGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.