miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1555 5' -61.4 NC_001347.2 + 197248 1.07 0.002131
Target:  5'- aCGCCACAUGAAGCCGCGGCGGCGCGUu -3'
miRNA:   3'- -GCGGUGUACUUCGGCGCCGCCGCGCA- -5'
1555 5' -61.4 NC_001347.2 + 147897 0.79 0.175136
Target:  5'- aGCCAU-UGggGCCGUgGGUGGCGCGg -3'
miRNA:   3'- gCGGUGuACuuCGGCG-CCGCCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 63810 0.77 0.221317
Target:  5'- uGCCcaccuCAUGAAGCgGCGGCGGCGaUGg -3'
miRNA:   3'- gCGGu----GUACUUCGgCGCCGCCGC-GCa -5'
1555 5' -61.4 NC_001347.2 + 101165 0.77 0.226466
Target:  5'- aGCgGCuu--GGCCGCGGCGGCGCa- -3'
miRNA:   3'- gCGgUGuacuUCGGCGCCGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 106229 0.75 0.277476
Target:  5'- aGCCAgAcGAGGCgGCGGCGGUgGCGUu -3'
miRNA:   3'- gCGGUgUaCUUCGgCGCCGCCG-CGCA- -5'
1555 5' -61.4 NC_001347.2 + 99125 0.74 0.31633
Target:  5'- gGUCAUGUucuuggGAAGCCGCGGCG-CGCGUa -3'
miRNA:   3'- gCGGUGUA------CUUCGGCGCCGCcGCGCA- -5'
1555 5' -61.4 NC_001347.2 + 80748 0.73 0.359147
Target:  5'- aGCCACcuaacGCCGCgGGCGGCGUGg -3'
miRNA:   3'- gCGGUGuacuuCGGCG-CCGCCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 36415 0.73 0.374292
Target:  5'- uGCUGuuuucCGUGuuGCCGaCGGCGGCGCGg -3'
miRNA:   3'- gCGGU-----GUACuuCGGC-GCCGCCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 31383 0.73 0.382025
Target:  5'- aGCCGcCAUGAGGCgGUGGCuGCGCc- -3'
miRNA:   3'- gCGGU-GUACUUCGgCGCCGcCGCGca -5'
1555 5' -61.4 NC_001347.2 + 2397 0.73 0.397807
Target:  5'- cCGCCGCc-GAGGCCgcGCGGCGGCuGCu- -3'
miRNA:   3'- -GCGGUGuaCUUCGG--CGCCGCCG-CGca -5'
1555 5' -61.4 NC_001347.2 + 151338 0.72 0.414002
Target:  5'- aCGCCGCA---GGCUcUGGUGGCGCGUg -3'
miRNA:   3'- -GCGGUGUacuUCGGcGCCGCCGCGCA- -5'
1555 5' -61.4 NC_001347.2 + 156668 0.72 0.42225
Target:  5'- cCGCCACccAUGGcggcgGGUCGUGGCGGCuGUGUc -3'
miRNA:   3'- -GCGGUG--UACU-----UCGGCGCCGCCG-CGCA- -5'
1555 5' -61.4 NC_001347.2 + 56239 0.72 0.430596
Target:  5'- uGCCGCAcaAGGCCGUGGCGGUaGgGUa -3'
miRNA:   3'- gCGGUGUacUUCGGCGCCGCCG-CgCA- -5'
1555 5' -61.4 NC_001347.2 + 137072 0.72 0.439038
Target:  5'- gGUCACGUG-AGaaGCGGCGGCGUu- -3'
miRNA:   3'- gCGGUGUACuUCggCGCCGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 66835 0.72 0.439038
Target:  5'- aGUUAC-UGGcAGCCGCGGCGGUgGCGa -3'
miRNA:   3'- gCGGUGuACU-UCGGCGCCGCCG-CGCa -5'
1555 5' -61.4 NC_001347.2 + 166059 0.72 0.447574
Target:  5'- gCGUCAUgcGGAGUCGCGGCGGUugggGCGc -3'
miRNA:   3'- -GCGGUGuaCUUCGGCGCCGCCG----CGCa -5'
1555 5' -61.4 NC_001347.2 + 173534 0.71 0.464917
Target:  5'- aGUCGCGUGGcGGCgGCGGUGGUgGCGg -3'
miRNA:   3'- gCGGUGUACU-UCGgCGCCGCCG-CGCa -5'
1555 5' -61.4 NC_001347.2 + 39753 0.71 0.473718
Target:  5'- aGCUACccgaagGAAGaCgCGCGGCaGGCGCGUa -3'
miRNA:   3'- gCGGUGua----CUUC-G-GCGCCG-CCGCGCA- -5'
1555 5' -61.4 NC_001347.2 + 85990 0.71 0.473718
Target:  5'- cCGCCACccGAAccguccGCCGCcGCGGCGCc- -3'
miRNA:   3'- -GCGGUGuaCUU------CGGCGcCGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 76633 0.71 0.482603
Target:  5'- gGCCGCGgcgGAGGCCGaaGCGGCcuuGCGc -3'
miRNA:   3'- gCGGUGUa--CUUCGGCgcCGCCG---CGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.